PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g011260.1.1 | ||||||||
Common Name | GAI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 589aa MW: 64525.6 Da PI: 4.8598 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 457.5 | 8.4e-140 | 199 | 574 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 lv++L++cAeav++++l+la++l+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+e++P+l Solyc11g011260.1.1 199 LVHTLMACAEAVQQENLTLADQLVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSMESSYTDVLQM--HFYETCPYL 279 689****************************************************........44666654455555444..5******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 kf+h+taNqaIlea+ g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +v Solyc11g011260.1.1 280 KFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFV 370 ******************************************************************************************* PP GRAS 183 akrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 a++l+dl+ L+++p Ea+a+n+v++lhrll++++++e+ vL+ +k+++Pk+v++veqea+hn++ F +rf eal+yys++fdsl Solyc11g011260.1.1 371 ANSLADLDATILDIRPseTEAVAINSVFELHRLLSRPGAIEK----VLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSL 457 ***************99999**************99999999....********************************************* PP GRAS 272 eak.............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348 e++ p+ ++++ ++++++lgr+i+nvvaceg++r+erhetl++Wr r++++GF pv+l+++a kqa++ll+ ++ +dg Solyc11g011260.1.1 458 ESSgssssasptgilpQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAgGDG 548 9999**********7777778********************************************************************** PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 yrvee++g+l+lgW++rpL+++SaW+ Solyc11g011260.1.1 549 YRVEENDGCLMLGWHTRPLIATSAWK 574 *************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 1.0E-33 | 42 | 107 | IPR021914 | Transcriptional factor DELLA, N-terminal |
SMART | SM01129 | 2.0E-31 | 42 | 115 | No hit | No description |
PROSITE profile | PS50985 | 68.281 | 173 | 553 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-137 | 199 | 574 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006808 | Biological Process | regulation of nitrogen utilization | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010233 | Biological Process | phloem transport | ||||
GO:0042176 | Biological Process | regulation of protein catabolic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0004709 | anatomy | axillary bud |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MKRDRDRDRE REKRAFSNGA VSSGKSKIWE EDEEEKPDAG MDELLAVLGY KVKSSDMADV 60 AQKLEQLEMA MGTTMEDGIT HLSTDTVHKN PSDMAGWVQS MLSSISTNFD MCNQENDVLV 120 SGCGSSSSII DFSQNHRTST ISDDDLRAIP GGAVFNSDSN KRHRSTTSSF STTSSSMVTD 180 SSATRPVVLV DSQETGVRLV HTLMACAEAV QQENLTLADQ LVRHIGILAV SQSGAMRKVA 240 TYFAEALARR IYKIYPQDSM ESSYTDVLQM HFYETCPYLK FAHFTANQAI LEAFTGCNKV 300 HVIDFSLKQG MQWPALMQAL ALRPGGPPAF RLTGIGPPQP DNTDALQQVG WKLAQLAETI 360 GVEFEFRGFV ANSLADLDAT ILDIRPSETE AVAINSVFEL HRLLSRPGAI EKVLNSIKQI 420 NPKIVTLVEQ EANHNAGVFI DRFNEALHYY STMFDSLESS GSSSSASPTG ILPQPPVNNQ 480 DLVMSEVYLG RQICNVVACE GSDRVERHET LNQWRVRMNS SGFDPVHLGS NAFKQASMLL 540 ALFAGGDGYR VEENDGCLML GWHTRPLIAT SAWKLLPDSG TGAGEVEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-68 | 194 | 573 | 14 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.4311 | 0.0 | cell culture| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00611 | ChIP-seq | Transfer from AT2G01570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g011260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY269087 | 0.0 | Lycopersicon esculentum GAI-like protein mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234365.1 | 0.0 | DELLA protein GAI | ||||
Swissprot | Q7Y1B6 | 0.0 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A0V0IPK9 | 0.0 | A0A0V0IPK9_SOLCH; Putative DELLA protein GAI-like | ||||
STRING | Solyc11g011260.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 | Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g011260.1.1 |
Entrez Gene | 543881 |