PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g008560.1.1
Common NameLOC101257035
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 678aa    MW: 75240.2 Da    PI: 6.7542
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g008560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.2e-15265324155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Solyc11g008560.1.1 265 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 324
                         57*******************666664478446*************************98 PP
2AP246.77.7e-15367418155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Solyc11g008560.1.1 367 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-17265334IPR016177DNA-binding domain
CDDcd000187.88E-23265334No hitNo description
PfamPF008475.6E-12265324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-16266333IPR001471AP2/ERF domain
PROSITE profilePS5103219.23266332IPR001471AP2/ERF domain
SMARTSM003801.2E-29266338IPR001471AP2/ERF domain
PRINTSPR003676.9E-6267278IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17367427IPR016177DNA-binding domain
CDDcd000184.04E-25367428No hitNo description
PfamPF008479.5E-10367418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-18368426IPR001471AP2/ERF domain
PROSITE profilePS5103219.177368426IPR001471AP2/ERF domain
SMARTSM003802.7E-33368432IPR001471AP2/ERF domain
PRINTSPR003676.9E-6408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MASSMNNWLG FSLSPHEEVL TSQQSSHQEC FDLLTSHHHQ QHHDQSTVVL PSLNVVPHDN  60
TPFGIFEAFN RNHHQSQDWN SHDTNYKTTS NMSMLMGTSC NSQHLENNQE PPKLENFLGI  120
GEQKLQQVCN NNNNNNNNNN YYNIYCSTPN NISENNANNI IGLSMIKNWL RNNPNSTTTT  180
TTTPSSLQDD KKEGDVVGVA GGGGNGNNAR SLSLSMSMGG DGGGDNSCSS ENNKQEIVSG  240
NNDGQISGAI VVPKKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV  300
YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRKSS  360
GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  420
AVTNFEINRY DVKSILESST LPIGGAAKRL KDVEQAEIAL DYQRASQENI GTTHLMNGSM  480
SAYGAGHCWP NITLQQAQPL SAMHYSNPYN SQQRLWCKQE VQDHDLTSQN FQDFQLGNAH  540
NYLMGLDNSS SSSMEQNNVT YHQGVGYASN NNNHHGGGGF VLPHLNGSSS YGGENDNEVK  600
QLQLGTHENI FGNYYHSQPA TSNDSIKVSN TLYDHQESVC NSNNWMSTAV PMALASRTST  660
AAICHGVAPT FTMWNDS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g008560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250505.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-146BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3Q7JIJ20.0A0A3Q7JIJ2_SOLLC; Uncharacterized protein
STRINGSolyc11g008560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-130AP2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]