PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g005780.1.1
Common NameLOC101263665
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 284aa    MW: 32646.3 Da    PI: 6.0667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g005780.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08170210954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Solyc11g005780.1.1 170 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 210
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14166227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-13167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.66E-11167215No hitNo description
PfamPF000108.6E-6171210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDINHINKLT TSTWDPTMSN MDNQQVFRDQ QQQQQPCLSS IPNDHIYHEH HHHQQQFHFE  60
HNPIWPSFPL QNPQHHHLPS SSTQQQQQQQ EEVVVVPFDH VLNNHVQTLI EDQEHDDQDE  120
DEEEEEELGA MKEMMFKIAS MQPVDIDPST IRKPKRRNVR ISNDPQSVAA RLRRERISEK  180
IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRQLQSS NHNLPPAQIP VSSCPNNENW  240
ANNIVTPSTK GLILGSSSST TTNNVTTFVG NTTLDPPYEV IGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g005780.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2124310.0Solanum lycopersicum chromosome 11 clone C11HBa0054I23, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250450.20.0transcription factor HEC3
TrEMBLA0A0V0HMN21e-149A0A0V0HMN2_SOLCH; Putative transcription factor HEC3-like
STRINGSolyc11g005780.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-44bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]