PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g086530.1.1 | ||||||||
Common Name | LOC101247176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 762aa MW: 86537.4 Da PI: 6.1661 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.9 | 1.7e-113 | 387 | 759 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++cA+av+++d + a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ +P+ Solyc10g086530.1.1 387 LRSLLINCAQAVAADDCRSATELLKQVRLHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADFLKAYHLYLASCPFR 474 689*************************************************************999998...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s +t N++I + ++++rvHiiDf+i +G+QWp+L+q +a+R++gpp+lRiTg++ p++g +e++eetg+rL+++A++++vpfe+++ Solyc10g086530.1.1 475 KISGFTSNKTIIRKSKHATRVHIIDFGILYGFQWPTLIQRIAAREGGPPNLRITGIEFPQPGfrPAERIEETGRRLSDYAKSFNVPFEYQA 565 *************************************************************9***************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e++++e+L+++++E l+Vn+ ++ ++l+de+v ++s r+ vL+l+++++P+++++ + ++++ F++rf e l ++salfd+l Solyc10g086530.1.1 566 -IAKKWETIRVEDLKLEKDEYLVVNCLYRFKNLHDETVLSDSSRTLVLNLIREINPDIFIHGIVNGAYSAPFFVTRFREVLFHFSALFDML 655 .7***************************************************************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka.akqaklllrkvksdgyrveeesgslvlg 361 ea++pre er +Ere++gre+ nv+aceg er+er et+++W+ r +a F++ p+++++ ++ a +r+ + + + +++++++++lg Solyc10g086530.1.1 656 EANVPREFPERLLIEREIFGREALNVIACEGWERVERPETYKQWQVRHLRARFTQTPFEQEEiMNMAVKKVRTSYHKDFIIDQDNKWMLLG 746 **********************************************************98761555566777777888************* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+r+++++S+W+ Solyc10g086530.1.1 747 WKGRTIYALSCWT 759 ************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.721 | 361 | 738 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-111 | 387 | 759 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 762 aa Download sequence Send to blast |
MDPRFNRFPT TVNGFNLENQ SLLSFSDNWK NNEPIIGAIY PDQKIVNAPT FENSFIQQTV 60 PSLSNDPSTT SNIALTSEMG TEDEYNEDFD FSDTVLSYIN QMLMEEDMED KTHMLHESLE 120 LQAKERSFYE ALGKKYPPSP HQNLAITEQN GEIPEDYYSA SLYSSTSNVI DTSGYLIDPS 180 ISNDHNYSYE QGLFICNGPY SSISSSNSIN NLGDGFLDSP VSPLHIPDIY NDSHPIWKFR 240 KGVEEASKFL PTYSKLLDNV VINDLLPQAK RGESGCAAAQ VEKRDVGATS PTGPRGTKNP 300 HRDDRDSEEE EERRSKQAAV YAESTVRSDE FDVILLHSMG DGREALTAYR ESLKNARTKP 360 TVQSKGFAVG RGGRGKKQSG KKEVIDLRSL LINCAQAVAA DDCRSATELL KQVRLHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADF LKAYHLYLAS CPFRKISGFT 480 SNKTIIRKSK HATRVHIIDF GILYGFQWPT LIQRIAAREG GPPNLRITGI EFPQPGFRPA 540 ERIEETGRRL SDYAKSFNVP FEYQAIAKKW ETIRVEDLKL EKDEYLVVNC LYRFKNLHDE 600 TVLSDSSRTL VLNLIREINP DIFIHGIVNG AYSAPFFVTR FREVLFHFSA LFDMLEANVP 660 REFPERLLIE REIFGREALN VIACEGWERV ERPETYKQWQ VRHLRARFTQ TPFEQEEIMN 720 MAVKKVRTSY HKDFIIDQDN KWMLLGWKGR TIYALSCWTP I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-48 | 376 | 760 | 8 | 380 | Protein SCARECROW |
5b3h_A | 4e-48 | 376 | 760 | 7 | 379 | Protein SCARECROW |
5b3h_D | 4e-48 | 376 | 760 | 7 | 379 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g086530.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312352.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_010312353.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A3Q7JH66 | 0.0 | A0A3Q7JH66_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086530.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g086530.1.1 |
Entrez Gene | 101247176 |
Publications ? help Back to Top | |||
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