PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g086380.1.1 | ||||||||
Common Name | SlGLD1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 514aa MW: 57771.8 Da PI: 5.2415 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.6 | 1.9e-116 | 137 | 505 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 lv++L++cAea+++++l+la++l++ ++ + +s+ g +m++ a+yf+ AL ++++r + ++ + s+ + +++l+ f++ + + Solyc10g086380.1.1 137 LVNTLMACAEAIQDNNLSLADELISDIRRIsVSQMGGAMKKEATYFADALYHKIHR---TNSEDIDESSYP---KDQVLS--MSFYDSCLF 219 6899**************************788889********************...222222222222...233333..36******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 lkf+h++aNq Ilea++ ++rvH+iDf+++qG QWpaLlqaL+ Rp+gpp lR+Tg+ +++ +++l+e+g+ La++Ae++gv+fef+ Solyc10g086380.1.1 220 LKFAHFIANQSILEAFADSKRVHVIDFSLNQGSQWPALLQALTLRPGGPPALRLTGIRGHSQPedTTDALQEVGRELAQLAESTGVEFEFR 310 *********************************************************8755446899************************ PP GRAS 180 vlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +v+++l+dle +L+++p E++aVn+v++lhrl++ ++++e+ vL+l+k++ Pk+v+++e+e++hn++ F++r+ ea +yys++f Solyc10g086380.1.1 311 GFVVHTLADLEAPMLNIRPsnVESVAVNSVFKLHRLFSIPGAIEK----VLDLIKQIDPKIVTIAEREVNHNETVFMNRIKEAWYYYSTMF 397 ******************9999***************77777777....****************************************** PP GRAS 269 dsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 d l +++ + s + + +e lgrei n+vaceg++r+ rhet+++Wr r+++aGF+ vpl+++++ a++ll+ + ++ yrvee++g+ Solyc10g086380.1.1 398 DLLeNSEWTKRSTIDLEIAAEHLGREIYNLVACEGTKRVVRHETFGQWRVRFNSAGFNLVPLGSNTYRHANMLLALYTnGKRYRVEEKDGC 488 ***777788888999999999*********************************************************8888********* PP GRAS 358 lvlgWkdrpLvsvSaWr 374 l+l W++rpL+++SaWr Solyc10g086380.1.1 489 LMLSWHSRPLITTSAWR 505 ****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.871 | 111 | 484 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-114 | 137 | 505 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MSSLEISMDT IMEDEDSFVS NTEAIIYAAS DISGWTHSLI SDHNIPNSSS STSLDEHHHH 60 HQQISTAAGG GGNEDDSMIV SSCASSRWFN NNKQIDDQQE IRIFNVDLRA LCENRLKSCG 120 GSESRDCLVY EESSVRLVNT LMACAEAIQD NNLSLADELI SDIRRISVSQ MGGAMKKEAT 180 YFADALYHKI HRTNSEDIDE SSYPKDQVLS MSFYDSCLFL KFAHFIANQS ILEAFADSKR 240 VHVIDFSLNQ GSQWPALLQA LTLRPGGPPA LRLTGIRGHS QPEDTTDALQ EVGRELAQLA 300 ESTGVEFEFR GFVVHTLADL EAPMLNIRPS NVESVAVNSV FKLHRLFSIP GAIEKVLDLI 360 KQIDPKIVTI AEREVNHNET VFMNRIKEAW YYYSTMFDLL ENSEWTKRST IDLEIAAEHL 420 GREIYNLVAC EGTKRVVRHE TFGQWRVRFN SAGFNLVPLG SNTYRHANML LALYTNGKRY 480 RVEEKDGCLM LSWHSRPLIT TSAWRGYVAN SRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-52 | 144 | 504 | 26 | 378 | Protein SCARECROW |
5b3h_A | 5e-52 | 144 | 504 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-52 | 144 | 504 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g086380.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233123 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-13b20 map 10, complete sequence | |||
GenBank | AC240203 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249633.3 | 0.0 | DELLA protein GAI | ||||
Swissprot | Q7Y1B6 | 1e-161 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A3Q7IN05 | 0.0 | A0A3Q7IN05_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g086380.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12864 | 11 | 19 | Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-151 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g086380.1.1 |
Entrez Gene | 101265384 |
Publications ? help Back to Top | |||
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