PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g086290.1.1
Common NameLOC101250648
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 266aa    MW: 31061.2 Da    PI: 7.221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g086290.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed ll +++ ++G g W++++ + g++R++k+c++rw++yl
  Solyc10g086290.1.1 11 KGSWTEDEDILLRKCIDKYGEGKWHLVPFRAGLNRCRKSCRLRWLNYL 58
                        799*******************************************97 PP
2Myb_DNA-binding45.32e-1464109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Solyc10g086290.1.1  64 RGDFALDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109
                         5677789***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.634662IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-21860IPR009057Homeodomain-like
SuperFamilySSF466892.88E-278105IPR009057Homeodomain-like
SMARTSM007171.1E-121060IPR001005SANT/Myb domain
PfamPF002499.0E-151158IPR001005SANT/Myb domain
CDDcd001672.39E-81358No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2261113IPR009057Homeodomain-like
PROSITE profilePS5129418.49763113IPR017930Myb domain
SMARTSM007175.8E-1463111IPR001005SANT/Myb domain
PfamPF002494.9E-1364109IPR001005SANT/Myb domain
CDDcd001677.45E-970109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNIAKTLGVR KGSWTEDEDI LLRKCIDKYG EGKWHLVPFR AGLNRCRKSC RLRWLNYLRP  60
HIKRGDFALD EIDLILRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLH KKLLITPPQI  120
QENKYNNTLK IITESTILRP RPRPGPQPRT FSSENNISWC TNNSMITNTL DKDDEQHNKE  180
IAVNICEKPT KKTPSSSIDD DGVQWWTNLL ENWKEFEEEA TAVLNFEEEN KLLPNLLYEE  240
HNSTTMQHGE NDDFSVDIDL WNLFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21111137108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g086290.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402030.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27f6 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249670.10.0transcription factor MYB113
SwissprotQ9FNV94e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q7IPC01e-180A0A3Q7IPC0_SOLLC; Uncharacterized protein
STRINGSolyc10g086290.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-63myb domain protein 113
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]