PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g086270.1.1
Common NameLOC101250068
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 260aa    MW: 29751.8 Da    PI: 6.9194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g086270.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed+ll ++++++G g W++++ + g++R++k+c++rw++yl
  Solyc10g086270.1.1 13 KGSWTEQEDLLLRKCINKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60
                        799*******************************************97 PP
2Myb_DNA-binding44.63.2e-1466110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Solyc10g086270.1.1  66 RGDFASDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110
                         6778899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-22862IPR009057Homeodomain-like
PROSITE profilePS5129423.197864IPR017930Myb domain
SuperFamilySSF466892.1E-2710107IPR009057Homeodomain-like
SMARTSM007176.7E-151262IPR001005SANT/Myb domain
PfamPF002493.4E-161360IPR001005SANT/Myb domain
CDDcd001676.78E-101560No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2063115IPR009057Homeodomain-like
SMARTSM007175.7E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129416.9965115IPR017930Myb domain
PfamPF002491.0E-1266111IPR001005SANT/Myb domain
CDDcd001679.21E-972111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MNSTSMSSLG VRKGSWTEQE DLLLRKCINK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL  60
RPHIKRGDFA SDEIDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKVNITKI  120
VPREKFKSKR GEISTKIEII KPQARKFISN TEKNITNNIV IVDKEEECKE IISEKQTRDA  180
SIDNGDEWWA NLLENCNDDV VEEEEGGGGG VTDYGKTITS LLHEEITPPL NGGGNIMQQE  240
QSDGWDDFFV DIDIWDLLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23131167109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g086270.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7053320.0Solanum lycopersicum cultivar Legend ANT1-like protein mRNA, partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249668.10.0transcription factor MYB113
SwissprotQ9FNV92e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q7INJ70.0A0A3Q7INJ7_SOLLC; Uncharacterized protein
STRINGSolyc10g086270.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-65myb domain protein 113
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]