PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g086260.1.1
Common NameANT1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 275aa    MW: 31906.1 Da    PI: 5.4676
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g086260.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd ll +++ ++G g W++++ + g++R++k+c++rw++yl
  Solyc10g086260.1.1 13 KGSWTDEEDFLLRKCIDKYGEGKWHLVPIRAGLNRCRKSCRLRWLNYL 60
                        799*******************************************97 PP
2Myb_DNA-binding45.71.6e-1466110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Solyc10g086260.1.1  66 RGDFEQDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 110
                         78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21863IPR009057Homeodomain-like
PROSITE profilePS5129417.38860IPR017930Myb domain
SuperFamilySSF466891.98E-2710107IPR009057Homeodomain-like
SMARTSM007174.9E-141262IPR001005SANT/Myb domain
PfamPF002492.4E-151360IPR001005SANT/Myb domain
CDDcd001672.01E-91560No hitNo description
PROSITE profilePS5129423.26261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2164115IPR009057Homeodomain-like
SMARTSM007171.7E-1365113IPR001005SANT/Myb domain
PfamPF002493.5E-1366111IPR001005SANT/Myb domain
CDDcd001677.21E-971111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNSTSMSSLG VRKGSWTDEE DFLLRKCIDK YGEGKWHLVP IRAGLNRCRK SCRLRWLNYL  60
RPHIKRGDFE QDEVDLILRL HKLLGNRWSL IAGRLPGRTA NDVKNYWNTN LLRKLNTTKI  120
VPREKINNKC GEISTKIEII KPQRRKYFSS TMKNVTNNNV ILDEEEHCKE IISEKQTPDA  180
SMDNVDPWWI NLLENCNDDI EEDEEVVINY EKTLTSLLHE EISPPLNIGE GNSMQQGQIS  240
HENWGEFSLN LPPMQQGVQN DDFSAEIDLW NLLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23131177110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g086260.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3488700.0Lycopersicon esculentum anthocyanin 1 (ANT1) mRNA, complete cds
GenBankEF4334160.0Solanum lycopersicum cultivar Ailsa Craig anthocyanin 1 (ANT1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234417.10.0anthocyanin 1
SwissprotQ9FNV93e-61MY113_ARATH; Transcription factor MYB113
TrEMBLQ6V7V00.0Q6V7V0_SOLLC; Anthocyanin 1
STRINGSolyc10g086260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-63myb domain protein 113
Publications ? help Back to Top
  1. Mathews H, et al.
    Activation tagging in tomato identifies a transcriptional regulator of anthocyanin biosynthesis, modification, and transport.
    Plant Cell, 2003. 15(8): p. 1689-703
    [PMID:12897245]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Sapir M, et al.
    Molecular aspects of Anthocyanin fruit tomato in relation to high pigment-1.
    J. Hered., 2008 May-Jun. 99(3): p. 292-303
    [PMID:18344529]
  4. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]