PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g086130.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 632aa MW: 70644.8 Da PI: 7.3225 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 120 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++pk++a+++ +++ +tl+ +d +g+sW++++iyr++++r++lt+GW+ Fv++++L +gD++vF Solyc10g086130.1.1 120 FAKTLTQSDANNGGGFSVPKNCADTIfptldynVNPPV--QTLSATDIHGKSWQFRHIYRGTPERHLLTTGWSTFVNQKKLVAGDSIVFL- 207 89**********************99****98533333..49************************************************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++++ + ++++r Solyc10g086130.1.1 208 -RNENDKISIGIRR 220 .4577777888887 PP | |||||||
2 | Auxin_resp | 99.1 | 6.3e-33 | 280 | 362 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a + a+++++Fev+++P+++t+eF vk+++v++al+++++ GmRfkm feted ++Gt+++v++ dp++Wp+S+Wr+L+ Solyc10g086130.1.1 280 ATKLATNGQPFEVIFYPQSTTPEFFVKASRVKAALQIPWCSGMRFKMPFETEDLVISWFMGTISSVQANDPSQWPDSPWRMLQ 362 567899************************************************99999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-36 | 111 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-28 | 114 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.08E-19 | 119 | 220 | No hit | No description |
Pfam | PF02362 | 7.2E-21 | 120 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-18 | 120 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.929 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-28 | 280 | 362 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MFLQNLLMAD NKSNCFDSRL WQACAGTMVK MPAVDSIVLY FPQGHAEHAG VNVEFRSDVK 60 IPSYIPCRVS SIKYMAERET DEVFAKIRLT PVRLSEFFET PEEEGMVKIG SDNSRKPLSF 120 AKTLTQSDAN NGGGFSVPKN CADTIFPTLD YNVNPPVQTL SATDIHGKSW QFRHIYRGTP 180 ERHLLTTGWS TFVNQKKLVA GDSIVFLRNE NDKISIGIRR IKKKSVAMEP ETSPWWFPSV 240 GNLTIPRGGF SAFLRDDHNT NSSWSLINRG NVKAESVIEA TKLATNGQPF EVIFYPQSTT 300 PEFFVKASRV KAALQIPWCS GMRFKMPFET EDLVISWFMG TISSVQANDP SQWPDSPWRM 360 LQVTWDEPNL LHNVMCVNPW LVEPVSNMPT INFNPYTPPL KKLRLSHTSD FPLNGHLPMS 420 GFPNNHLEFS IDPPMSSFPI HHLLRPYGCP PNNTPVGMQG ARHAPYNLSL PDIHTNNLLS 480 SLSPVGFPSL HHVVASPNTS NNTMIPKPSR NAGISSLLTL GSSTQTNKKF DSEKTTQFVL 540 FGQPIVIEQQ TSQSNSRISV SPRHATNSFS DGNEYKKENT SDSSDTSFVH NSVPDYLPSK 600 SFRSEENVEI GHSKVFIESE DIGQTKQLGE W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-76 | 16 | 383 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g086130.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM565131 | 0.0 | Solanum lycopersicum auxin response factor 14 (ARF14) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015055116.1 | 0.0 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A3Q7INH1 | 0.0 | A0A3Q7INH1_SOLLC; Auxin response factor | ||||
STRING | Solyc10g086130.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-167 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g086130.1.1 |
Publications ? help Back to Top | |||
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