PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g085620.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 401aa MW: 45046.4 Da PI: 7.1633 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.5 | 1.5e-33 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Solyc10g085620.1.1 28 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.38 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 26 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.6E-17 | 27 | 83 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-24 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-10 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-24 | 128 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MSVPERHLFL QGGNGNGDSG LVLSTDAKPR LKWTPDLHER FIEAVNQLGG ADKATPKSVL 60 KLMGIQGLTL YHLKSHLQKY RLSKNLHGQA NASGANKAVA AAGVERISEN SATCMSNPSM 120 VPQPNKNIQI SEAIQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQSVLE KAQETLGRQN 180 METVGLEAVK VQLSEFVSKA SNQCLNSPFT DIKELSGFHS QQTQATQPTD RSIDSCLTSR 240 DGSLRDNTMH DNQIGLRPFG FTPSIECKDI ENDTRLQQTE LRWCDNLKEN RRLFSPMNEG 300 REKTFTRETN CNNLSMSIGL QDEKLNGSMN HSDGNFNGTE RDVKLFHQVT NRSESVPQRH 360 KSSQEYKLSY FEPKLDLNMH DETDAASSCK QFDLNGFSWS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.24605 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g085620.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244920 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-6e17 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312321.1 | 0.0 | myb-related protein 2 isoform X1 | ||||
Refseq | XP_010312322.1 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9FK47 | 1e-127 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | A0A3Q7IMN9 | 0.0 | A0A3Q7IMN9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g085620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2946 | 24 | 51 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-126 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g085620.1.1 |
Publications ? help Back to Top | |||
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