PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g084380.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 423aa    MW: 46986.7 Da    PI: 9.9557
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g084380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.7e-32149205360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  Solyc10g084380.1.1 149 DGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSY-DGQIAEIVYRGEHNHPK 205
                         9***************************************.***************85 PP
2WRKY100.69.1e-32341397258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dg++WrKYGqK+vkgs +prsYYrCts++C+v+k ver+ +dpk++++tYeg+Hnh
  Solyc10g084380.1.1 341 EDGFRWRKYGQKVVKGSSYPRSYYRCTSPKCSVRKFVERTMDDPKAFITTYEGKHNH 397
                         7******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-29137206IPR003657WRKY domain
SuperFamilySSF1182902.88E-25146206IPR003657WRKY domain
SMARTSM007744.0E-35147205IPR003657WRKY domain
PfamPF031069.9E-25149204IPR003657WRKY domain
PROSITE profilePS5081123.835149206IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-32331400IPR003657WRKY domain
SuperFamilySSF1182906.28E-28335400IPR003657WRKY domain
PROSITE profilePS5081132.34335400IPR003657WRKY domain
SMARTSM007741.6E-35340399IPR003657WRKY domain
PfamPF031062.8E-25341397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAITAIRPKT VRLKPVTNHA LVGESSSQVG VSEAPAGCRS DYILQSVEKP KVLYKPIAKL  60
APRKTIPLLE NKGISISDQR REKADAKADV QSAKEAKQHH DLTTESKQSL LAKSGEDKRI  120
VHSTIVSEST EEVPQSLINT SNVDRPSYDG YNWRKYGQKQ VKGSEYPRSY YKCTHLKCPV  180
KKKVERSYDG QIAEIVYRGE HNHPKPQPPK RNLSDVQVRA AVCNDTSKET NNPAWSNQHP  240
QTSEAYVCRI ENPNDVGLTI NSAHSSKAPW FYDPIAAAGM HTDAGNSEDS AEGSKKLKAT  300
CDDTKTKRRK TKALCNGAGT SGESTFPYIP KQSTTDSEIT EDGFRWRKYG QKVVKGSSYP  360
RSYYRCTSPK CSVRKFVERT MDDPKAFITT YEGKHNHGVP NRRPNSEASK TSSKSSAMKE  420
KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29140400177Probable WRKY transcription factor 4
2lex_A5e-29140400177Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g084380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2448860.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249802.10.0WRKY transcription factor 44
RefseqXP_010312266.10.0WRKY transcription factor 44
RefseqXP_010312267.10.0WRKY transcription factor 44
RefseqXP_010312268.10.0WRKY transcription factor 44
TrEMBLK4D3M40.0K4D3M4_SOLLC; Uncharacterized protein
STRINGSolyc10g084380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Representative plantOGRP10259810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.24e-65WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]