PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g083900.1.1
Common NameLOC101247484
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 201aa    MW: 23542.3 Da    PI: 8.4669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g083900.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-15855148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W +eEde+l   v+ +G ++W++ a+t g++R++k+c++rw++yl
  Solyc10g083900.1.1  8 RGQWLEEEDERLSMMVAVFGERRWDALAKTSGLKRSGKSCRLRWLNYL 55
                        899*******************************************97 PP
2Myb_DNA-binding513.4e-1664106448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          T++E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w+++l
  Solyc10g083900.1.1  64 ITADEERLIIRLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 106
                         59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.826355IPR017930Myb domain
SuperFamilySSF466896.97E-276102IPR009057Homeodomain-like
SMARTSM007175.2E-11757IPR001005SANT/Myb domain
PfamPF002496.2E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-20962IPR009057Homeodomain-like
CDDcd001679.67E-81155No hitNo description
PROSITE profilePS5129425.89456110IPR017930Myb domain
SMARTSM007171.0E-1560108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2463109IPR009057Homeodomain-like
PfamPF002492.5E-1464106IPR001005SANT/Myb domain
CDDcd001672.03E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MQEEELRRGQ WLEEEDERLS MMVAVFGERR WDALAKTSGL KRSGKSCRLR WLNYLRPNLK  60
HGHITADEER LIIRLQKQFG NKWSKIAKQL PGRTDNEIKN YWRSHLRKKT LIYKQESSES  120
NTSNSEQRSS ILKRDTVLNS SSNSEDNFSE KGDCSSADSF AYSSNEVTLL DWIPSWSYEQ  180
TRMEHHMYFC STNLCSCYPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2751101105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-27511055159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-27511055159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g083900.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249793.11e-148transcription factor MYB27
SwissprotQ9SCP14e-50MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3Q7IM361e-147A0A3Q7IM36_SOLLC; Uncharacterized protein
STRINGSolyc10g083900.1.11e-147(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-51myb domain protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]