PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g083510.1.1 | ||||||||
Common Name | LOC101261864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 390aa MW: 42379.1 Da PI: 9.4242 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80.9 | 1.1e-25 | 156 | 199 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgrsrsrk++e Solyc10g083510.1.1 156 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRSRSRKPVE 199 79***************************************987 PP | |||||||
2 | QLQ | 34.1 | 8.7e-13 | 81 | 115 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ aQ+q+L+ l++++++a++PvP+eLl ++ Solyc10g083510.1.1 81 YFSLAQWQELELHSLIFRHFVAGAPVPSELLHLVK 115 7*****************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0091 | 80 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.113 | 81 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-7 | 81 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.141 | 156 | 200 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-21 | 157 | 199 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDFNMKQWSN QHESENQESP TKLPRLLLDF HSVSSDSASA AALPLFVSEP TTSTTTCTKL 60 MSDSATTVTT KFPRIGSGGG YFSLAQWQEL ELHSLIFRHF VAGAPVPSEL LHLVKKSIIA 120 SPPPPPSYYF AHPYQQYPHY QQALMQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ 180 KYCERHVHRG RSRSRKPVEI PTPANNGSKN NNTVSHHQAF GKMTGHAHAG GGAPQFSLSG 240 HSPSTNAPFH LNQRPIKGPP QEVLQKDVSI GDGKSSSGQI LRHFFDDWPR QQLQEGDNAA 300 TSLSISMPGV GGNPSSDFSL KLSTGNYYDS GTQVSNVERS TWGTSHHHVA SMGGPLAEAL 360 RSSTTNSSPT SVLHQLARGS ASEASYIST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g083510.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013977 | 0.0 | Lycopersicon esculentum clone 133022R, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249453.1 | 0.0 | growth-regulating factor 3 | ||||
TrEMBL | A0A3Q7ILL4 | 0.0 | A0A3Q7ILL4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g083510.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 | Representative plant | OGRP9959 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-72 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g083510.1.1 |
Entrez Gene | 101261864 |
Publications ? help Back to Top | |||
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