PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g083210.1.1
Common NameLOC101254147
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 309aa    MW: 35139.4 Da    PI: 6.9361
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g083210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.21.2e-3149154199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k ltpsdv+k++rlv+pk+ ae++       + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++
  Solyc10g083210.1.1  49 FEKPLTPSDVGKLNRLVIPKQNAEKYfplndsiNDSGEKGFLLSFEDELGKLWKFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDVVLFER 139
                         99****************************99944556899*************************************************8 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         ++ ++ + +++++rk
  Solyc10g083210.1.1 140 HRVDGDRQFIGWRRK 154
                         777888899**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-3943156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-3044151IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-2847144No hitNo description
PROSITE profilePS5086313.98749154IPR003340B3 DNA binding domain
PfamPF023621.7E-2849155IPR003340B3 DNA binding domain
SMARTSM010198.9E-2449155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSITHFSSQN YFFSEHYNFM EESLRNSSSP PKQNSNQLEE IEIPKEHLFE KPLTPSDVGK  60
LNRLVIPKQN AEKYFPLNDS INDSGEKGFL LSFEDELGKL WKFRYSYWNS SQSYVLTKGW  120
SRFVKEKKLD AGDVVLFERH RVDGDRQFIG WRRKNGAAVA AASATTVAPP GGGGGWGQIH  180
PFPSAAGVPY QTDFLHAGRG VMHNQLTTPN GNNTRRQVRL FGVNLECEVD DSSSWSESST  240
PDGSISSNHH QQSQEYYQSQ AGQHYYQYQV HYSNPHANPP ASSYNNNHHY NTDMDYSRDV  300
NQMRYHQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-47451544113B3 domain-containing transcription factor NGA1
5os9_B6e-47451544113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g083210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249426.10.0B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ23e-67Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A3Q7JG250.0A0A3Q7JG25_SOLLC; Uncharacterized protein
STRINGSolyc10g083210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-63B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]