PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080920.1.1
Common NameLOC101248059
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 94aa    MW: 10983.3 Da    PI: 9.6947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080920.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10348244
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                        ++WTt   +++ +a  ++ ++     W+ Iar++g g++ ++++ ++
  Solyc10g080920.1.1  3 QNWTTKQNKKFEEALVMYDKDnngeKWHNIARYVG-GKSVEEVRRHY 48
                        79*********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.4E-7154IPR001005SANT/Myb domain
PROSITE profilePS5129313.116156IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.8E-5358IPR009057Homeodomain-like
PfamPF002491.2E-7348IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-13459IPR009057Homeodomain-like
CDDcd001677.87E-7452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MSQNWTTKQN KKFEEALVMY DKDNNGEKWH NIARYVGGKS VEEVRRHYDL LLKDITQIEN  60
GQVPLPNYRT TSDQTNARGY ANEQRLLKNL KLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-245931193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080920.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249320.14e-64protein RADIALIS-like 1
SwissprotF4JVB82e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A3Q7JFL88e-63A0A3Q7JFL8_SOLLC; Uncharacterized protein
STRINGSolyc10g080920.1.11e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.19e-33RAD-like 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]