PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g080770.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 451aa MW: 49584.2 Da PI: 8.4386

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g080770.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.3e-11	164	205	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L+ Solyc10g080770.1.1 164 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 205 7789*************************9999998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-8	160	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.358	162	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-6	164	208	No hit	No description
Pfam	PF00170	4.8E-8	164	206	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.12E-21	164	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.2E-8	165	210	No hit	No description
PROSITE pattern	PS00036	0	167	182	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-33	246	321	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MPSFISQIPV SKNHMGTEGN NTNTSRMSEF GVLEQYLGFR IGDGVNVNRS PLFNSTSAAN 60 PAVGFDVSGT INRNLAPSNT SLSTAAPGSH VIQLQSNLVP AAGTHPENWG ESNMADSGSR 120 TDTSTDMDGD DRNQRDSRIE TGQSRAIAAS DSSDKSKEKV LDQKTLRRLA QNREAARKSR 180 LRKKAYVQQL ENSRLKLSQL EQDLQRARQQ GKYISNMADQ SNGAGASGTL AFDAEYSRWL 240 EEHNKHINEL RTAVNSHASD PELRSIVNNV TAHYDEVFRV KGNAAKADVF HVLSGMWKTP 300 AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLAGIYNLQQ SSHQAEDALS QGMEALQQSL 360 AETLANGSPA TEGSSGDVAN YMGQMAMAMG KLGTLEGFLR QADNLRQQTL QQMHRILTTR 420 QSARALLAIS EYFSRLRALS SLWLARPREQ *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MPSFISQIPV SKNHMGTEGN NTNTSRMSEF GVLEQYLGFR IGDGVNVNRS PLFNSTSAAN  60
PAVGFDVSGT INRNLAPSNT SLSTAAPGSH VIQLQSNLVP AAGTHPENWG ESNMADSGSR  120
TDTSTDMDGD DRNQRDSRIE TGQSRAIAAS DSSDKSKEKV LDQKTLRRLA QNREAARKSR  180
LRKKAYVQQL ENSRLKLSQL EQDLQRARQQ GKYISNMADQ SNGAGASGTL AFDAEYSRWL  240
EEHNKHINEL RTAVNSHASD PELRSIVNNV TAHYDEVFRV KGNAAKADVF HVLSGMWKTP  300
AERCFMWIGG FRPSELLKLL VNQLEPLTEQ QLAGIYNLQQ SSHQAEDALS QGMEALQQSL  360
AETLANGSPA TEGSSGDVAN YMGQMAMAMG KLGTLEGFLR QADNLRQQTL QQMHRILTTR  420
QSARALLAIS EYFSRLRALS SLWLARPREQ *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.145	0.0	fruit\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g080770.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF143442	0.0	Lycopersicon esculentum NPR1-interactor protein 1 mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001296800.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-2.1
Refseq	XP_015055987.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-2.1 isoform X1
Swissprot	O24160	0.0	TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	A0A3Q7IKP6	0.0	A0A3Q7IKP6_SOLLC; Uncharacterized protein
STRING	Solyc10g080770.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-150	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Solyc10g080770.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]