PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g080480.1.1
Common NameLOC101262368
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 290aa    MW: 30304.2 Da    PI: 9.4704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g080480.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                        -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                        k ++C  f+ t  C++G++C+F H
  Solyc10g080480.1.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                        7789******************** PP
2zf-CCCH31.23.7e-1097122227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC++f+    Ck+Gd+C++aHg+
  Solyc10g080480.1.1  97 KTKLCNRFSTAEGCKFGDKCNYAHGE 122
                         9***********************96 PP
3zf-CCCH37.53.9e-12257280226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         kt+lC +fa+ G C +GdrC+FaHg
  Solyc10g080480.1.1 257 KTKLCENFAK-GSCTFGDRCHFAHG 280
                         9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-894126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-1394127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.19295123IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-495122IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.9E-15156233IPR004088K Homology domain, type 1
SMARTSM003229.6E-13161231IPR004087K Homology domain
PROSITE profilePS5008414.634162226IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.2E-16163231IPR004088K Homology domain, type 1
CDDcd001051.38E-14164226No hitNo description
PfamPF000137.5E-12164228IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-15253286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8254285IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7255281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.22255282IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9257280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDYRKRTRND VGANVNGGVK KYKPEVDSIS GGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYSAATQ MMKLTPAPSL RNAAAPPYSN GNAPSLKTKL CNRFSTAEGC KFGDKCNYAH  120
GEWELGKPTI PSQEDPRAMG FGSMPGRFGG GRVESAASFG TSATAKISVD ASLAGAIIGK  180
GGVNSKQICR QTGAKLAIRD HETDANLRNI ELEGTFEQIS QASAMVRELI NSLGPVGGGG  240
RTHGNSGGAA PPMNNLKTKL CENFAKGSCT FGDRCHFAHG AAELRKTGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.168500.0fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g080480.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442860.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249283.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3Q7IL210.0A0A3Q7IL21_SOLLC; Uncharacterized protein
STRINGSolyc10g080480.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-83C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]