PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g080300.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 125aa MW: 14699.5 Da PI: 6.3945

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g080300.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.3e-09	64	115	1	46
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 +++WT+ E+e l+++ ++ +Wk+I g kgRt+ ++k++w++ Solyc10g080300.1.1 64 KLPWTKMEEETLKEGLLRFSHFhdRWKRILDFGGdvfmKGRTPGDLKDKWRN 115 689*************985499************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.422	59	117	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.3E-10	59	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.16E-10	60	118	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-4	63	119	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-6	65	115	IPR001005	SANT/Myb domain
CDD	cd11660	7.39E-10	66	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031627	Biological Process	telomeric loop formation
GO:0000783	Cellular Component	nuclear telomere cap complex
GO:0003691	Molecular Function	double-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MHAEVTQVHP PQPHVPHEHV CQESSSIEVS SEEEQDEIGS GYLVQFRNQE NNFCPWIPQM 60 RRKKLPWTKM EEETLKEGLL RFSHFHDRWK RILDFGGDVF MKGRTPGDLK DKWRNISKAD 120 EKET*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8899	0.0	flower\| fruit\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g080300.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249272.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_010312132.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_010312133.1	1e-85	uncharacterized protein LOC101258507 isoform X1
Refseq	XP_019071606.1	7e-86	uncharacterized protein LOC101258507 isoform X2
Refseq	XP_025883755.1	1e-85	uncharacterized protein LOC101258507 isoform X1
TrEMBL	A0A3Q7IKX5	2e-84	A0A3Q7IKX5_SOLLC; Uncharacterized protein
STRING	Solyc10g080300.1.1	8e-89	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3406	8	9
Representative plant	OGRP1443	7	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	4e-08	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	Solyc10g080300.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]