PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g078750.1.1 | ||||||||
Common Name | LOC101252539 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 294aa MW: 30560.6 Da PI: 9.6277 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.9e-07 | 36 | 60 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C f+ C++G++C+F H Solyc10g078750.1.1 36 KTKPCTKFFSIAGCPFGESCHFLHH 60 9***********************6 PP | |||||||
2 | zf-CCCH | 29.4 | 1.4e-09 | 97 | 122 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd C+FaHg+ Solyc10g078750.1.1 97 KTKLCNKFNTAEGCKFGDACNFAHGE 122 8***********************96 PP | |||||||
3 | zf-CCCH | 39.3 | 1.1e-12 | 260 | 284 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +GdrC+FaHg Solyc10g078750.1.1 260 YKTKLCENFAK-GSCTFGDRCHFAHG 284 9**********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.033 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.225 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 35 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-5 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-12 | 93 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 94 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.657 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-7 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.19E-15 | 161 | 237 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.3E-12 | 165 | 235 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.781 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-16 | 166 | 235 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.7E-12 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.79E-14 | 168 | 230 | No hit | No description |
SuperFamily | SSF90229 | 6.93E-9 | 257 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-16 | 257 | 290 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-8 | 259 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.309 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 260 | 284 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDFRKRSRNG AGSNFNGGLK KSKPEMDSLS GGIGSKTKPC TKFFSIAGCP FGESCHFLHH 60 VPGGYNAVAQ MMNLGSAPAS RNVAAPPMSN GNAPAVKTKL CNKFNTAEGC KFGDACNFAH 120 GEWQIGKPIV PSQEDPRAMG VGPAPSRFGG RTEPAVSGPA SSFGTTATAK ISVDASLAGA 180 IIGKGGVNSK QICRQTGAKL AIREHETDTN LRNIELEGTF EQISQASAMV RELINSLGPV 240 GGPGRDPAGR GGPAPPMNNY KTKLCENFAK GSCTFGDRCH FAHGDAEMRK TGV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.9611 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g078750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244580 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312058.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-105 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3Q7IK94 | 0.0 | A0A3Q7IK94_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g078750.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-86 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g078750.1.1 |
Entrez Gene | 101252539 |
Publications ? help Back to Top | |||
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