PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g078720.1.1

Common Name

LOC101251632

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 403aa MW: 45312.1 Da PI: 6.3149

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g078720.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.5e-32	225	279	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Solyc10g078720.1.1 225 KARIRWTQDLHDRFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRN 279 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.434	222	282	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	223	279	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	223	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	225	280	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	229	278	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-20	309	356	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSIQNYELAS DCNLEFPQMG FCFQPESSVE NGCQQQQQPN FWPSTDSSSS RTIISRIGSS 60 PSAFFATERY LGLTQYDYQD NNNSCTQLSK NLDPQTTSYT QQCGNGFSAD SSARVDTDFP 120 KISMPSFIRS QFSSSQPFGP EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF 180 QGNQDYGVSN NTCGFNLVHI RQQSGSQPAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE 240 CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDCPNNV 300 TQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL 360 LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSIQNYELAS DCNLEFPQMG FCFQPESSVE NGCQQQQQPN FWPSTDSSSS RTIISRIGSS  60
PSAFFATERY LGLTQYDYQD NNNSCTQLSK NLDPQTTSYT QQCGNGFSAD SSARVDTDFP  120
KISMPSFIRS QFSSSQPFGP EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF  180
QGNQDYGVSN NTCGFNLVHI RQQSGSQPAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE  240
CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDCPNNV  300
TQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL  360
LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.22800	0.0	callus\| flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g078720.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244580	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249167.1	0.0	myb family transcription factor PHL5-like
TrEMBL	A0A3Q7IKJ3	0.0	A0A3Q7IKJ3_SOLLC; Uncharacterized protein
STRING	Solyc10g078720.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	3e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc10g078720.1.1
Entrez Gene	101251632

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]