PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g078310.1.1

Common Name

LOC101265183

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 291aa MW: 31879.7 Da PI: 6.9774

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g078310.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.8	1.6e-30	89	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Solyc10g078310.1.1 89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-20	86	146	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	86	145	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	88	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	90	142	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	92	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MREEDSNWFA KWEEELPKPE ELMPLSQTLI TPDLAIAFDI PNPTSPNPQS KQQQTPHVQS 60 SQPNSSAEFE STELNGGGGG DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM 120 QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SNSGSGGSNA QSLSGAGVDP AMDNLFASSP 180 VPAHFLHPGR GNSDHFMPFV PVTPMPHHHH MGVVVGHHPQ VQQQYRQFGS PANGHFEHPF 240 LSRQSQQQVQ RMGTSVHNGS PVVSSYVEDV DSATAVNGRK VLTLFPTGED *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	2e-32	89	145	1	57	Transcription factor LUX
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7632	0.0	flower\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g078310.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249126.1	0.0	transcription factor MYBC1
Refseq	XP_015056300.1	0.0	transcription factor MYBC1-like
Swissprot	O22210	8e-63	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	A0A3Q7IK13	0.0	A0A3Q7IK13_SOLLC; Uncharacterized protein
STRING	Solyc10g078310.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2432	23	54
Representative plant	OGRP1157	17	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	7e-87	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc10g078310.1.1
Entrez Gene	101265183

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]