PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g076920.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 284aa MW: 31436.6 Da PI: 7.8018

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g076920.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.5	1.4e-08	254	275	5	26
CHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka 26 +r++r++kNRe+A rsR+RK+ Solyc10g076920.1.1 254 RRQKRMIKNRESAARSRARKQV 275 79******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-6	247	276	No hit	No description
CDD	cd14707	8.46E-13	254	275	No hit	No description
SuperFamily	SSF57959	9.75E-5	254	278	No hit	No description
PROSITE pattern	PS00036	0	257	272	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MVIQEMGSRG GGEAKANALA TQGSLYSLTL DEVRNQLGNC GKPLNSMNLD EFVKTVWTIE 60 SNQEVVGGND YGPVQQGASQ HHPSSITMSR DLSKKTVDEV WQDIQQGVKI DNVDKRSQER 120 QLTLGEITLE DFLVKAGVIA ESTQGKRISG LVFGVDSMSL TQQAQWTHYQ IPAMQQVPEQ 180 QHQQQQQNIP PVFMPGHPIQ QPLPVVANPI MDATYPETQV TMSPAHIIGT LSDTQTSGRK 240 RVAPRDVAEN SIERRQKRMI KNRESAARSR ARKQVLLLIL HLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15599	0.0	fruit\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g076920.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233129	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-248a13 map 10, complete sequence
GenBank	AC238917	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a12 map 10, complete sequence
GenBank	AC238921	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-234c10 map 10, complete sequence
GenBank	AC239535	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-111j2 map 2, complete sequence
GenBank	AC240220	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-23g5 map 10, complete sequence
GenBank	AC240223	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-56g22 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249091.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_019071679.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_025888939.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A3Q7IK21	0.0	A0A3Q7IK21_SOLLC; Uncharacterized protein
STRING	Solyc10g076920.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48
Representative plant	OGRP540	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-63	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Solyc10g076920.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]