PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g076460.1.1

Common Name

LOC101244920

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 303aa MW: 34157.4 Da PI: 7.1606

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g076460.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtp+LH+rFv+ave+LGG+++AtPk +l+lm++kgL ++hvkSHLQ+YR+ Solyc10g076460.1.1 62 VRLRWTPDLHRRFVHAVERLGGHDRATPKLVLQLMNIKGLNIAHVKSHLQMYRS 115 59***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.714	58	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-30	58	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-22	63	117	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.27E-15	63	116	IPR009057	Homeodomain-like
Pfam	PF00249	9.2E-9	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MMEDSGDTEF SKTSPNSNQN EEEDENVTST KLHKDGGSSS ISTIEESEKK FSVRPYVRSK 60 MVRLRWTPDL HRRFVHAVER LGGHDRATPK LVLQLMNIKG LNIAHVKSHL QMYRSKKIDD 120 PSQGITNHHK LCMEGGDSYI YNLSQLPMLS SFKQRFNPTF RYGDVSSMNC QDHDLMHSSI 180 MGQSTIDKAR IGLYTTLNER IFGSNPIDKL TPLFQIAEKS QARILSTPLK RKAMDCDLID 240 LNLSLGVKQK HNSHDNDDDD DDGSTLTLSL SSQRSPSRLK EDVNYAIIED ARRGASTLDL 300 TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-18	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g076460.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240197	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004249715.1	0.0	uncharacterized protein LOC101244920
TrEMBL	A0A3Q7IJK0	0.0	A0A3Q7IJK0_SOLLC; Uncharacterized protein
STRING	Solyc10g076460.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc10g076460.1.1
Entrez Gene	101244920

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]