PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g076380.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 324aa    MW: 36429.3 Da    PI: 3.8478
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g076380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-201270155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+WvAeIr+p     ++  k kr +lg+f++a+eAa a+++a+k ++g
  Solyc10g076380.1.1 12 CKYRGVRQRT-WGKWVAEIREPAYisgDNksKGKRLWLGSFDSADEAAIAYDEAAKVMYG 70
                        79*****999.**********655665335556***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-311279No hitNo description
PfamPF008473.6E-141270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-281379IPR001471AP2/ERF domain
PROSITE profilePS5103222.6551378IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-201378IPR016177DNA-binding domain
SMARTSM003801.3E-351384IPR001471AP2/ERF domain
PRINTSPR003671.9E-91425IPR001471AP2/ERF domain
PRINTSPR003671.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MQGKGGPENS SCKYRGVRQR TWGKWVAEIR EPAYISGDNK SKGKRLWLGS FDSADEAAIA  60
YDEAAKVMYG SNATLNFPNY SSNGSITRTS SLELSGQSCV DHEDLVLDGS KNDEIESDLK  120
TSDTPNTDLS YDYVNHGSPA CSWNEEDLEV IMEENSKNEL IDSEFETPLT KEDEFVQCLN  180
FNDVSNTKNV NEDVGARLEY MEHCVMDDNC SMEATNVLDT FCLTENHDEA FDFQRFLEES  240
FDFKLNYAEQ FDCTYAYNQQ IDLQNSETDS EIRSDGIWKE QNLGGFGLDN FGASNSTQPE  300
DNIEDLSMFS SDFDVSSFLN DII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-191478360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-191484669ATERF1
3gcc_A3e-191484669ATERF1
5wx9_A1e-18285379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.243764e-99leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g076380.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5000114e-07Lycopersicon esculentum dehydration responsive element binding protein (DREB1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767967.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERN3-like
TrEMBLM1BAV21e-140M1BAV2_SOLTU; Uncharacterized protein
STRINGSolyc10g076380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.14e-27ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]