PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g074680.1.1 | ||||||||
Common Name | LOC101255150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 827aa MW: 90054.7 Da PI: 6.4103 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 413 | 2.7e-126 | 448 | 807 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lLl+cAeavs+++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp+++ + +++ ++a+++f+ +sP++k Solyc10g074680.1.1 448 LTLLLQCAEAVSADNLEEANKMLLEVSELSTPFGTSAQRVAAYFSEAMSARLLNSCLGIYAALPMTSVPMLYTQKMASAFQVFNGISPFIK 538 579*****************************************************************9888******************* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 fsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s ++le+tg+rL++fAe+lg+pfef + va Solyc10g074680.1.1 539 FSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMDALEATGKRLSDFAERLGLPFEFLP-VA 624 *********************************************************....***************************.7* PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +++ +l++e+L+v+++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a Solyc10g074680.1.1 625 DKVGNLDPEKLNVSKREAVAVHWLQ--HSLYDVTGSDPN----TLSLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGAC 708 ************************9..999999999999....**********************.899********************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 +++eseer++vE++ll++ei+nv+a g +r + + +++Wre+l+++GF++++l +aa+qa lll +++s+gy++ e++g+l lgWkd Solyc10g074680.1.1 709 YGEESEERHVVEQQLLSKEIRNVLAVGGPSRSGDAK-FNNWREKLQQSGFRSLSLAGNAAAQATLLLGMFPSHGYTLVEDNGTLKLGWKDL 798 *****************************9777766.****************************************************** PP GRAS 366 pLvsvSaWr 374 L+++SaWr Solyc10g074680.1.1 799 CLFTASAWR 807 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.82 | 421 | 787 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-124 | 448 | 807 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0051457 | Biological Process | maintenance of protein location in nucleus | ||||
GO:0090610 | Biological Process | bundle sheath cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 827 aa Download sequence Send to blast |
MAKALPVSGE NCTGVNVVGD SSGEKTSKQL FHCENGKMVR KRAASDMEIQ TGAGEEHRYL 60 RRPAMIGGSH SQVGDSRVCG NSNFGHGMNS NLTTTMTMTT QVSNYSTMQM LPSSTNLCGV 120 TSRGGPGIDT GFSNSTPNLT YTDAITSHHQ PQGTQTQNNN SQSPSVCVFS GLPLFPPDRN 180 RQNSGLLLQQ PPAAAAAVVS SPLTTGRIDS MEDSTSATAW IDSIIKDLIN SSAQVSVPQL 240 IQNVREIIHP CNPYLASLLE YRLRSLTSNN NGGADQNDPM ECWRRKESLP AQLAGLQQAQ 300 NNANLLQHNI LSLPDSSNNQ YLNWDIALPN SHNAPVAPSH NQHQQLGGNN PTATDLSFVT 360 LSPQVQQQQQ QQQQESPHSH SQQQAAVDLD QQQKQQQSSS SLSPTSVADN SAKTKTSTPA 420 PPVPINTYRE KKEEERQQKR DEEGLHLLTL LLQCAEAVSA DNLEEANKML LEVSELSTPF 480 GTSAQRVAAY FSEAMSARLL NSCLGIYAAL PMTSVPMLYT QKMASAFQVF NGISPFIKFS 540 HFTANQAIQE AFEREDRVHI IDLDIMQGLQ WPGLFHILAS RPGGPPYVRL TGLGTSMDAL 600 EATGKRLSDF AERLGLPFEF LPVADKVGNL DPEKLNVSKR EAVAVHWLQH SLYDVTGSDP 660 NTLSLLQRLA PKVVTVVEQD LSHAGSFLGR FVEAIHYYSA LFDSLGACYG EESEERHVVE 720 QQLLSKEIRN VLAVGGPSRS GDAKFNNWRE KLQQSGFRSL SLAGNAAAQA TLLLGMFPSH 780 GYTLVEDNGT LKLGWKDLCL FTASAWRPNS LHAAPGSRHF SRPNMD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 431 | 810 | 3 | 382 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23160 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g074680.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244883 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-25i14 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249012.1 | 0.0 | protein SCARECROW | ||||
Refseq | XP_010327696.1 | 0.0 | protein SCARECROW | ||||
Swissprot | Q2Z2E9 | 0.0 | SCR_IPONI; Protein SCARECROW | ||||
TrEMBL | A0A3Q7IJC3 | 0.0 | A0A3Q7IJC3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g074680.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8258 | 24 | 30 | Representative plant | OGRP2183 | 14 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g074680.1.1 |
Entrez Gene | 101255150 |
Publications ? help Back to Top | |||
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