PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g053890.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 167aa MW: 19263.4 Da PI: 6.7581

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g053890.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.6	6.9e-16	27	118	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv+ + ++ l++p k a++ ++ ++ ++++ed+ gr+W ++ +++ g+ +++GW +F +++Lk+g+f+vF++++ ++ + Solyc10g053890.1.1 27 FFKVM--ILETFLQVLCFPPKIARSVSYL--TDLEISFEDSYGRRWMATV--CNYNGSLAIRQGWDKFSAEHDLKVGEFLVFHYVS-DDLN 110 55666..3334445689999999999877..4568*************..******************************98.6777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 + v++f + Solyc10g053890.1.1 111 FIVQIFGT 118 79999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.8E-19	23	121	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.801	25	119	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-17	26	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.87E-14	26	116	No hit	No description
Pfam	PF02362	1.2E-13	27	117	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-8	27	119	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MKLLEMMGAF YDNEDGLLIN GKKVISFFKV MILETFLQVL CFPPKIARSV SYLTDLEISF 60 EDSYGRRWMA TVCNYNGSLA IRQGWDKFSA EHDLKVGEFL VFHYVSDDLN FIVQIFGTSG 120 CEKIKFSCNI GKEKPKERTY QEITTTEECQ SGKLFVHKFF RVILFL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g053890.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159850.1	2e-71	PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBL	A0A3Q7IGZ0	1e-119	A0A3Q7IGZ0_SOLLC; Uncharacterized protein
STRING	Solyc10g053890.1.1	1e-120	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2210	23	52
Representative plant	OGRP8972	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	1e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc10g053890.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]