PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc10g050970.1.1 | ||||||||
Common Name | LOC101246484 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25080.2 Da PI: 8.9333 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 95 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++g Solyc10g050970.1.1 95 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFTTAEDAARAYDRAAIEFRG 144 59*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 95 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-13 | 95 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-22 | 95 | 151 | No hit | No description |
SuperFamily | SSF54171 | 2.88E-22 | 95 | 153 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-37 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.75 | 95 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-12 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MQRSTKLSGE EEFSIMVAAL TNVITGAATI SSFPCTSGMS PPLFRVPEET ERCQYCKING 60 CLGCNYFATS SAAAGVVNNN KALKIVGKTK KKKKNYRGVR QRPWGKWAAE IRDPRRAARV 120 WLGTFTTAED AARAYDRAAI EFRGPRAKLN FSFTDYTSIQ QHNTTTPMQV LQQQQPAPSQ 180 LQQGINTEEE EFWDQLMNSD NEIQHYLYRE SSDSANGYIA HSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-24 | 92 | 151 | 2 | 62 | ATERF1 |
3gcc_A | 4e-24 | 92 | 151 | 2 | 62 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.8455 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc10g050970.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC244865 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-14f4 map 10, complete sequence | |||
GenBank | AC245732 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-42i2 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248735.1 | 1e-169 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 9e-36 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A3Q7IGA1 | 1e-168 | A0A3Q7IGA1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g050970.1.1 | 1e-169 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-35 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc10g050970.1.1 |
Entrez Gene | 101246484 |