PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g050420.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 417aa MW: 47935.5 Da PI: 9.3089

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g050420.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	61.8	1.3e-19	204	255	3	55
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l+Wt +LH++F++ +eqL G+ + Pk+i+ +m+v+gLt+ +v+SHLQk R Solyc10g050420.1.1 204 CLKWTANLHAKFMKSLEQL-GEGRCYPKEIVAVMDVPGLTRMQVASHLQKCRF 255 589**************.9***************************995 PP
2	Response_reg	29.2	4.5e-11	14	117	1	105
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 v++vd e ++ + ++++ +y +v ++++++ea+e+l + + +D+i++ + p+++ ++ll + + + + +++ ++ +e +a++a Solyc10g050420.1.1 14 VVLVDPETKNVTKMVDLMKSYDY-KVITVRTSSEAMEMLSKGEekIDVIIISVPTPNLNSFKLLDQAVTLD--IISLFICDEYNELLAKKA 101 689999***************.9**********665556***************9998877..888888899999** PP HHTTESEEEESS--HH CS Response_reg 90 lkaGakdflsKpfdpe 105 lk Ga+ f+ p ++e Solyc10g050420.1.1 102 LKEGASLFVHRPLNEE 117 **********7654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.17E-12	11	133	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	4.0E-12	11	149	No hit	No description
PROSITE profile	PS50110	19.469	13	127	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	3.2E-5	14	117	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.38E-5	16	122	No hit	No description
SuperFamily	SSF46689	3.4E-13	200	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-19	201	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-15	203	255	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MATGYYGIVD EVRVVLVDPE TKNVTKMVDL MKSYDYKVIT VRTSSEAMEM LSKGEEKIDV 60 IIISVPTPNL NSFKLLDQAV TLDIISLFIC DEYNELLAKK ALKEGASLFV HRPLNEEIVK 120 YLWQFVLRRK IERETAKKGS EDGHKMTVND VDTNNMDGDN EVLSEKINYE EVEDHIGSNG 180 KYKRRRKNNR KDMKKNKVIK QKNCLKWTAN LHAKFMKSLE QLGEGRCYPK EIVAVMDVPG 240 LTRMQVASHL QKCRFNNWRS PEERKSNWRL SGQESSSESQ QKSSNRKYGT MPRFQNNIPN 300 QIQKGPEFPF STPNTSIGES STQEKLYPPQ CQVQPHYPNL DNSLNNPFLS VQNNVGCVLQ 360 QHKHRPVLEM FGSQRLRDPI IGNITHRPGS AFNCWNHHIQ SGSDSEYYVS KNNRLF*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MATGYYGIVD EVRVVLVDPE TKNVTKMVDL MKSYDYKVIT VRTSSEAMEM LSKGEEKIDV  60
IIISVPTPNL NSFKLLDQAV TLDIISLFIC DEYNELLAKK ALKEGASLFV HRPLNEEIVK  120
YLWQFVLRRK IERETAKKGS EDGHKMTVND VDTNNMDGDN EVLSEKINYE EVEDHIGSNG  180
KYKRRRKNNR KDMKKNKVIK QKNCLKWTAN LHAKFMKSLE QLGEGRCYPK EIVAVMDVPG  240
LTRMQVASHL QKCRFNNWRS PEERKSNWRL SGQESSSESQ QKSSNRKYGT MPRFQNNIPN  300
QIQKGPEFPF STPNTSIGES STQEKLYPPQ CQVQPHYPNL DNSLNNPFLS VQNNVGCVLQ  360
QHKHRPVLEM FGSQRLRDPI IGNITHRPGS AFNCWNHHIQ SGSDSEYYVS KNNRLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g050420.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244948	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-33k20 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883438.1	0.0	two-component response regulator ARR2-like
TrEMBL	M1E1C8	0.0	M1E1C8_SOLTU; Uncharacterized protein
STRING	Solyc10g050420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA813	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	5e-23	response regulator 2

Link Out ? help Back to Top
Phytozome	Solyc10g050420.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]