PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g018710.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 172aa MW: 19746.5 Da PI: 10.279 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.5 | 1.5e-31 | 49 | 144 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+k rhsk++T++g++dRRvRls + a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s+ ++++ + s ++++ + Solyc10g018710.1.1 49 ATGRKYRHSKVSTAKGPKDRRVRLSPNAAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALCEFPNNFHSSKlNPKKMQYSFDQEQCPef 139 589*************************************************************944444333456666665554444433 PP TCP 89 ....k 89 + Solyc10g018710.1.1 140 sqenR 144 32222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-29 | 50 | 138 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.783 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MPQSLCKKPE KWANFTVSKQ ELNKGTRRMK QKRAKTDVIE GHGGRTIRAT GRKYRHSKVS 60 TAKGPKDRRV RLSPNAAIQF YDVQDRLGYD RPSKAIDWLI KEAKAAIDAL CEFPNNFHSS 120 KLNPKKMQYS FDQEQCPEFS QENRGVPNSE CGVQDKQQEV NYHIPILFSL Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 57 | 110 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 57 | 110 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 32 | RRMKQKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g018710.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244767 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-66a15 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069120.1 | 1e-115 | transcription factor TCP10-like | ||||
TrEMBL | A0A3Q7J8J0 | 1e-126 | A0A3Q7J8J0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g018710.1.1 | 1e-127 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 2e-35 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g018710.1.1 |
Publications ? help Back to Top | |||
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