PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g018560.1.1 | ||||||||
Common Name | LOC101268621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 29195.1 Da PI: 7.5935 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.7e-18 | 172 | 206 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l Solyc10g018560.1.1 172 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 206 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.4E-83 | 3 | 254 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 5.8E-14 | 166 | 216 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.451 | 166 | 202 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.95E-14 | 169 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 170 | 204 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.37E-13 | 171 | 218 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 172 | 197 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.8E-16 | 172 | 206 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDVYGRLTPE VFRIDDFLDF SNEEDIFSSS KTAIDFDLNH HYQPPPTDSI ADTGCYYHAP 60 PNSVDFTDKL CVPSDDVAEL EWLSNFVEDS SNNFPSNNLT QTMYHLNNTN TILHSKSRSK 120 RSRNSNSTSW NTSSLQRHKS ANQKNSNQDE NSGDYNSNKL SNNSKIITSR KCTHCASEKT 180 PQWRTGPLGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TQHSNSHRKV MELRRQKEII 240 DQQQQHGMYG HHYPVC* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g018560.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248553.1 | 0.0 | GATA transcription factor 4-like | ||||
Swissprot | O49741 | 7e-70 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A3Q7ID17 | 0.0 | A0A3Q7ID17_SOLLC; GATA transcription factor | ||||
STRING | Solyc10g018560.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-60 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g018560.1.1 |
Entrez Gene | 101268621 |
Publications ? help Back to Top | |||
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