PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g018510.1.1
Common NameLOC104649549
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 392aa    MW: 43366.8 Da    PI: 5.4573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g018510.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.62.9e-15223270355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++hn+ Er+RRd+iN+++ +L++l+P++      K + a++L +++eY+k+L+
  Solyc10g018510.1.1 223 ATHNQSERKRRDKINQRLKTLQKLVPTS-----SKTDTASMLDEVIEYLKQLR 270
                         58*************************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.70E-16217274No hitNo description
PROSITE profilePS5088817.339220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-18223292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-13223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17223279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-16226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDYEVAELKW EKGEVVMHGL GPPGVPCYYK PLSTPSPTKY TWDDKPHAAA GGTLESIVNQ  60
ATTHNIDIGD EGGDDDDLVS WFDDCLPETS MDIVAVVPTS CTNYNQQVPP STRVASCSGD  120
AEMARVGMGS SFEEISEDFE NQEAKNLIGS MVYEGKNNTV SPGETSLGEE RVLTTTSTFK  180
HNKRKTLNNH DSRGQESRDN EDEDEKKRSK ISSFSTKRCR VAATHNQSER KRRDKINQRL  240
KTLQKLVPTS SKTDTASMLD EVIEYLKQLR AQVKAMSMMI HVNMQPPPMM LPNMAFQQQQ  300
QQFQMSMMGM ARPIDVNALS SPNITTIPSI LHTTAPSNFN NPPIASPGAD PLASLVAVRQ  360
LSQPMTMDAY SRMAALYQQY LQSNANLGFK N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233ERKRRD
2229234RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.100559e-42leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g018510.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445150.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-27m10 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071429.10.0transcription factor UNE10-like
TrEMBLA0A3Q7ID060.0A0A3Q7ID06_SOLLC; Uncharacterized protein
STRINGSolyc10g018510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-62bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]