PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g011910.2.1 | ||||||||
Common Name | LOC101258194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 34778.3 Da PI: 4.8869 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.6 | 4e-31 | 140 | 198 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+ eHnh+ Solyc10g011910.2.1 140 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 198 79************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-31 | 130 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.175 | 134 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-26 | 137 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 139 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-26 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEEDWDLNAV VRSCTATTTA GDISFTNFQP RTTDDDNNSN NNSVFCFEDL VLKQSLVLNR 60 NKISDDFEEL HQLCKPFINQ PSEKLTVISS QSPSQQLTDT KSIQPNRTLS CNLHAQSQTI 120 KRRKNHLKKV CQVAADGLSS DMWSWRKYGQ KPIKGSPYPR GYYKCSTSKG CLARKQVERN 180 RSDPNMFIVT YTAEHNHPMP THRNSLAGIS RQKTVKPTGS SPVSSPVTNS PAPENQESSR 240 DEKEDTFEDD DDEFGVSDVG LDKMEPEDDF FDGLDELEIP ATGDISPENF PANFQFPWLA 300 NNAATTAAGG R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-22 | 127 | 201 | 5 | 80 | Disease resistance protein RRS1 |
5w3x_D | 8e-22 | 127 | 201 | 5 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g011910.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238918 | 7e-12 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence | |||
GenBank | BT013284 | 7e-12 | Lycopersicon esculentum clone 134891F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248063.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A3Q7J7M9 | 0.0 | A0A3Q7J7M9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g011910.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 5e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g011910.2.1 |
Entrez Gene | 101258194 |
Publications ? help Back to Top | |||
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