PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g011910.2.1
Common NameLOC101258194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 312aa    MW: 34778.3 Da    PI: 4.8869
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g011910.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31140198259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Solyc10g011910.2.1 140 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 198
                         79************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-31130200IPR003657WRKY domain
PROSITE profilePS5081135.175134200IPR003657WRKY domain
SuperFamilySSF1182901.28E-26137200IPR003657WRKY domain
SMARTSM007741.0E-36139199IPR003657WRKY domain
PfamPF031066.0E-26141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEEDWDLNAV VRSCTATTTA GDISFTNFQP RTTDDDNNSN NNSVFCFEDL VLKQSLVLNR  60
NKISDDFEEL HQLCKPFINQ PSEKLTVISS QSPSQQLTDT KSIQPNRTLS CNLHAQSQTI  120
KRRKNHLKKV CQVAADGLSS DMWSWRKYGQ KPIKGSPYPR GYYKCSTSKG CLARKQVERN  180
RSDPNMFIVT YTAEHNHPMP THRNSLAGIS RQKTVKPTGS SPVSSPVTNS PAPENQESSR  240
DEKEDTFEDD DDEFGVSDVG LDKMEPEDDF FDGLDELEIP ATGDISPENF PANFQFPWLA  300
NNAATTAAGG R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-22127201580Disease resistance protein RRS1
5w3x_D8e-22127201580Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g011910.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389187e-12Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence
GenBankBT0132847e-12Lycopersicon esculentum clone 134891F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248063.10.0WRKY transcription factor 22-like
TrEMBLA0A3Q7J7M90.0A0A3Q7J7M9_SOLLC; Uncharacterized protein
STRINGSolyc10g011910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-61WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]