PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g009550.2.1
Common NameLOC101263251
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 291aa    MW: 33654.7 Da    PI: 5.4235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g009550.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-2799159259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK++ g+ +pr+YYrCt++   gC ++k+v++s++dp v+++tY+g H ++
  Solyc10g009550.2.1  99 DDGYSWRKYGQKNILGAIHPRAYYRCTHRntqGCLATKQVQKSEQDPLVFDVTYKGMHSCK 159
                         8***************************98889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-2791160IPR003657WRKY domain
SuperFamilySSF1182906.67E-2594160IPR003657WRKY domain
SMARTSM007748.6E-3998160IPR003657WRKY domain
PfamPF031061.5E-2599159IPR003657WRKY domain
PROSITE profilePS5081122.53899161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEKVKVWNKE SLITELTQGK EFVNQFDPLA SPEENDFLLE KILSSIDKSL SILNCEVYNG  60
TNDPFPLRDQ GQNKKRKKMQ QWSKQVRVHG TELESFNHDD GYSWRKYGQK NILGAIHPRA  120
YYRCTHRNTQ GCLATKQVQK SEQDPLVFDV TYKGMHSCKT SHSSTFISYE KQKPNQCQIK  180
KQRVENLNTI KEETVPFTPL QCESHNAQCF VNSIEPLASE SMYLSLLPYQ EEEFEMDKIL  240
QSSESDRIVF SSTPTSIIDS PFSRDWDLSV NDQLDVHDPN LMIDISEYFT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-1897159769OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g009550.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2447790.0Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-51n10 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248079.10.0probable WRKY transcription factor 30
TrEMBLA0A3Q7ICZ90.0A0A3Q7ICZ9_SOLLC; Uncharacterized protein
STRINGSolyc10g009550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-32WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]