PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g008780.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 583aa MW: 66229.7 Da PI: 8.2476 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 65.2 | 2.4e-20 | 102 | 235 | 1 | 66 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l + Solyc10g008780.1.1 102 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKApfqvfsnkinstnkalnvrnvenevg 192 589**************************************************************88888776665555555555555555 PP TCP 66 ..........................................s 66 + Solyc10g008780.1.1 193 qfaleqswsadkkteleelarrssklnatvqystdqfpegcyK 235 5555544444444444444333333333333333222222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-19 | 103 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.683 | 105 | 163 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MKHHLEVSNE NEDKSSSSSQ QDDDDDENKD EFFQEILQSD YQHMQQWPNY FTPPSSTLVP 60 KKQNNTQCPS HKEETKKVSL KRKPKRAKQD VMEVHGSRIV RATGRKDRHS KVSTATGPKD 120 RRVRLSPNTA IQFYDVQDRL GYDRPSKAID WLIKEAQRAI NALEKAPFQV FSNKINSTNK 180 ALNVRNVENE VGQFALEQSW SADKKTELEE LARRSSKLNA TVQYSTDQFP EGCYKEQSSK 240 VCQANATQIV NSSANGSKIQ SFCQIQTHPQ AHLHSQTKRQ SPNDAKIQSF CEYQTHPQSH 300 FHSQTKKQSP NVAKTLSFCE MQTPSQGHFH SQTKNQPTND AKIQSFCQLQ THPQSHFQSE 360 TKNQSPNVAK IQSFGELQTT PQSHFHSQTQ KQSTNDAKIQ SFCELQTHPQ GHFHSETKNQ 420 SPNVAKVQSF CELQTHPQSH FQSETKKQSP NVAKIQSFCE LQTPPLSHFQ SETKNQSTQL 480 GNFFSFQSCH QNEPISFSGD HHHGFSFSPQ NFPTVLGQNQ MFNYQREPLQ STSNFPQTIS 540 YSNNIGFAND GLLGLSSAPI TQQQQQQDEQ GSISTTLLHY QD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-18 | 110 | 163 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-18 | 110 | 163 | 1 | 54 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g008780.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7ICJ6 | 0.0 | A0A3Q7ICJ6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g008780.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15569 | 6 | 6 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 4e-34 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g008780.1.1 |
Publications ? help Back to Top | |||
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