PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g008160.2.1 | ||||||||
Common Name | GLK2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 193aa MW: 20937.2 Da PI: 10.6866 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 25.1 | 3.8e-08 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m +gLt+++++SHLQkYR + Solyc10g008160.2.1 1 MATHGLTRHNIASHLQKYRAH 21 8899***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-7 | 1 | 23 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MATHGLTRHN IASHLQKYRA HRKHLLAREA EAASLNHRKQ MYSGATTIGG GGKRILMNPW 60 PAPPTMGFPP MAHHVRPLHV WGHPHVNNSF WHPHYQRVSN SLVPGTPCFS APITSARFAA 120 PLMVPGIPPS PAIIKVDTVA SDLHPSNESI DAAIEDVLSK PQLPLPIGLK PPSIDSVLNE 180 LQRQGITKIP PT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.25850 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g008160.2.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ316459 | 0.0 | Solanum lycopersicum golden2-like protein (GLK2) mRNA, complete cds | |||
GenBank | JX163897 | 0.0 | Solanum lycopersicum cultivar Ailsa Craig golden 2-like 2 transcription factor (GLK2) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266252.1 | 1e-139 | transcription factor GLK2 | ||||
Swissprot | Q5Z5I4 | 2e-36 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | I6RHK0 | 1e-137 | I6RHK0_SOLLC; Golden 2-like 2 transcription factor | ||||
STRING | Solyc10g008160.2.1 | 1e-138 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 | Representative plant | OGRP2840 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.2 | 4e-34 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g008160.2.1 |
Entrez Gene | 101055613 |
Publications ? help Back to Top | |||
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