PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc10g007130.2.1

Common Name

LOC101264256

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 595aa MW: 64498.8 Da PI: 4.5187

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc10g007130.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17	1e-05	14	74	7	55
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f++ ++ e+e+ + p +e +LA+k ++ +qV +WFqNrR+ Solyc10g007130.2.1 14 FNPAEVAEMEAILQAhnITMPAREVLVDLAEKFssssersgkfVVQMKQVWNWFQNRRYAI 74 66666677777766432456777777888888888888888878999***********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.04E-9	4	76	IPR009057	Homeodomain-like
SMART	SM00389	0.0021	7	81	IPR001356	Homeobox domain
CDD	cd00086	8.96E-4	13	75	No hit	No description
PROSITE profile	PS50071	8.778	13	77	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-6	13	80	IPR009057	Homeodomain-like
Pfam	PF16719	2.6E-41	161	288	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MGRPPSNGGP SFRFNPAEVA EMEAILQAHN ITMPAREVLV DLAEKFSSSS ERSGKFVVQM 60 KQVWNWFQNR RYAIRAKTAK SPGRYIAHPV PPSDPAAVKA PAKLSASPMP HSDPAAGRIM 120 PQAPQPIPAP QVRTMPQVPQ PLPAPSVAVQ SVGRSASDNT QMEFEAKSAR DGAWYDVASF 180 LSHRSVENGD PEVLVRFAGF GAEEDEWVNV RMHVRQRSLP CESSECVAVL PGDLILCFQE 240 GKEQALYYDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL 300 NAESVKQQKI GNDPTTGNTM KVYPPADTPQ KAQTESKMKL AEPTQKQPAP EYTIKPEPNV 360 FPMPQKPRTD SLTGNTLGET TPKLMEEMAE KPVAETAEAP QEEKIETPLA EITNKAPAEA 420 PEQPPAETTP KPLADSTSKP AEATEVLPAE TTPNPLSVST SKQAEPTEET PAETTLKPPA 480 ASTLKPDEAP EQPPAETTPE PPASSTSNPV ETPKNPPAET TSVEETTLEP PAETTPEPPA 540 DATSKPAEQS EEPPAETTLE PPADSTSTPV EEASEEHVDA GPPAASTDQD SADV*

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MGRPPSNGGP SFRFNPAEVA EMEAILQAHN ITMPAREVLV DLAEKFSSSS ERSGKFVVQM  60
KQVWNWFQNR RYAIRAKTAK SPGRYIAHPV PPSDPAAVKA PAKLSASPMP HSDPAAGRIM  120
PQAPQPIPAP QVRTMPQVPQ PLPAPSVAVQ SVGRSASDNT QMEFEAKSAR DGAWYDVASF  180
LSHRSVENGD PEVLVRFAGF GAEEDEWVNV RMHVRQRSLP CESSECVAVL PGDLILCFQE  240
GKEQALYYDA HVLDAQRRRH DVRGCRCRFL VRYDHDQSEE IVPLRKVCRR PETDYRLQQL  300
NAESVKQQKI GNDPTTGNTM KVYPPADTPQ KAQTESKMKL AEPTQKQPAP EYTIKPEPNV  360
FPMPQKPRTD SLTGNTLGET TPKLMEEMAE KPVAETAEAP QEEKIETPLA EITNKAPAEA  420
PEQPPAETTP KPLADSTSKP AEATEVLPAE TTPNPLSVST SKQAEPTEET PAETTLKPPA  480
ASTLKPDEAP EQPPAETTPE PPASSTSNPV ETPKNPPAET TSVEETTLEP PAETTPEPPA  540
DATSKPAEQS EEPPAETTLE PPADSTSTPV EEASEEHVDA GPPAASTDQD SADV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	2e-48	159	292	1	134	SHH1 SAWADEE
4iur_B	2e-48	159	292	1	134	SHH1 SAWADEE
4iut_A	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	2e-48	159	292	1	134	SAWADEE HOMEODOMAIN HOMOLOG 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc10g007130.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004248253.1	0.0	protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
Swissprot	Q8RWJ7	1e-138	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A3Q7J625	0.0	A0A3Q7J625_SOLLC; Uncharacterized protein
STRING	Solyc10g007130.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8803	21	24
Representative plant	OGRP1641	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-123	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Solyc10g007130.2.1
Entrez Gene	101264256

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]