PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g006130.1.1
Common NameLOC101249309
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 222aa    MW: 24390.3 Da    PI: 8.8166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g006130.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-202876355
                 AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aaka++aa++ l+g
  Solyc10g006130.1.1 28 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDAAARTLRG 76
                        8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.03E-182784No hitNo description
PROSITE profilePS5103223.0112784IPR001471AP2/ERF domain
SMARTSM003809.6E-372790IPR001471AP2/ERF domain
PfamPF008471.3E-122776IPR001471AP2/ERF domain
PRINTSPR003674.6E-102839IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212885IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-312884IPR001471AP2/ERF domain
PRINTSPR003674.6E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRRGRATPAA AAAAVKPDGS GGLKEIRFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA  60
EDAAKAYDAA ARTLRGPKAK TNFPLPMYSQ HHQFNRSLNP NDRLVDPRLY SQEAPIICQR  120
PTSSSMSSTV ESFSGPRPPR QQTAVLPSRK HPRSPPVEPD DCRSDCDSSS SVVEDGDCEG  180
GNDNIVSSSL RNPLPFDLNF PPPMDDVYAN SNDLYCTALC L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-202889668ATERF1
3gcc_A3e-202889668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.30410.0callus| flower| fruit| leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. EAR motif of SIERF36 is most likely responsible for the strong early flowering phenotype and a reduction in stomatal density and photosynthesis that is common to both Arabidopsis and tobacco when SlERF36 is over-expressed. [SlERF36]
    [PMID: 25036097]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g006130.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132410.0Lycopersicon esculentum clone 134527F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355161.11e-162ethylene response factor F.1
SwissprotQ9SXS88e-77ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A3Q7IBC21e-161A0A3Q7IBC2_SOLLC; Uncharacterized protein
STRINGSolyc10g006130.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-34ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Upadhyay RK, et al.
    The EAR motif controls the early flowering and senescence phenotype mediated by over-expression of SlERF36 and is partly responsible for changes in stomatal density and photosynthesis.
    PLoS ONE, 2014. 9(7): p. e101995
    [PMID:25036097]