PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g005680.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 704aa    MW: 76125.8 Da    PI: 4.9982
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g005680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.33.8e-24296354160
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         ++Dg+nW KYG  +vkgse+prs+Y+Ct+++C vkk++ r + +++v+e++Y+g H+h+k
  Solyc10g005680.1.1 296 VEDGHNWIKYGENQVKGSEYPRSFYKCTHPNCLVKKEIARYH-QGHVTEVIYNGAHKHPK 354
                         58***************************************9.9**************85 PP
2WRKY97.68.1e-31509566259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vkg+++prsYY+Ct +gC+v+k+vers  d+  v++ Y g+Hnh+
  Solyc10g005680.1.1 509 EDGYRWRKYGQKLVKGNPNPRSYYKCTNSGCSVRKHVERSPLDQMSVITSYDGKHNHD 566
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.062291355IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-20294355IPR003657WRKY domain
SuperFamilySSF1182902.22E-19295355IPR003657WRKY domain
SMARTSM007743.6E-21296354IPR003657WRKY domain
PfamPF031067.3E-19297353IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-32493568IPR003657WRKY domain
SuperFamilySSF1182902.48E-26501568IPR003657WRKY domain
PROSITE profilePS5081135.117503568IPR003657WRKY domain
SMARTSM007741.6E-34508567IPR003657WRKY domain
PfamPF031068.1E-24509566IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MSGFNDLVPN GDWLPTSPSP SPSSRALISS LRADDFGWPA HLEEANESTC KNLVVEPQEH  60
VNWSNSVGND GAQTGAMTNQ TVNVSAPSKQ NTSSRGGLME RMAARTGFNV SRLNTDGLRP  120
SFVSQNQEIK SPYLSIAAGL SPSILLYSPV MLYNSLTILP QVSPPTGLLP CASGNEGRSV  180
MLMTEAADKM NETAFGTNSS SYLSFNPIME TGGVNEFQIE GSVDPNNSLQ LHSMEATQNE  240
QICNETTDIP MFTEEDVRGS DKNPEVRAFN AVGGITEHPP SLEKQQNEGA AGDTSVEDGH  300
NWIKYGENQV KGSEYPRSFY KCTHPNCLVK KEIARYHQGH VTEVIYNGAH KHPKPQPNQI  360
SGPGSSSSFG DLQLDNVDPT GTGVNSDLAL ETVQQGPTAG GLKRKNDNLE AISFAALHSE  420
YCRGAATLHS NDAQLGSADT VDIASIFSTE GDDHGTCGSA PLDCDDGGYD PESKIRKIEA  480
DATDTSSVSR SMKQPRIVVE TISEVDVIED GYRWRKYGQK LVKGNPNPRS YYKCTNSGCS  540
VRKHVERSPL DQMSVITSYD GKHNHDAPEE RSSIQVSSIA SIYRSNPIIT NAQDQVGRPE  600
PKQLQKNSRR YGRGPPFGST SGFNSSETNQ QQGLTGPSMT GFNSEQHQFS VPAYPYPGWP  660
QPVNDAGFVL PEGKPMPNPN MNYSNASSTY QQTMNGLPPG PQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-31499568877Probable WRKY transcription factor 4
2lex_A5e-31499568877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g005680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352570.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A3Q7IAT70.0A0A3Q7IAT7_SOLLC; Uncharacterized protein
STRINGSolyc10g005680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-97WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]