PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g091950.1.1 | ||||||||
Common Name | LOC101246474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 420aa MW: 46946.4 Da PI: 8.5757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.7e-19 | 248 | 296 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Solyc09g091950.1.1 248 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYMLRG 296 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.82E-30 | 246 | 306 | No hit | No description |
PROSITE profile | PS51032 | 22.445 | 247 | 304 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-31 | 247 | 305 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 247 | 310 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 247 | 305 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 248 | 259 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-12 | 248 | 296 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 270 | 286 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MENQSLKSES IMQKELPTCY KQVAIESLSR FFKDPHIFSD LNHEITFINS SPTKFSEFLP 60 LNFHQNESSL SLSSSSSSLS TSSSYQHHQD QGNNNNIFPL NNFLDHQTCA SSTNSLSSNY 120 PTLGLFLQEP SILEISKRAA ESLSNKNHKS SSAALFPMSS SIGHESQIHY KEVATTNPTN 180 WLKMNQTITN CTTTKGFSDY WLSTTKTQPM KFKGSSRKSS LVHYEKSSSS SSSSSSSSSM 240 IASQGKLFRG VRQRHWGKWV AEIRLPRNRT RVWLGTFDTA EEAAFAYDTA AYMLRGDYAN 300 LNFPHLKNQL KANSINGNIT SLLEAKIRAI STQSKKKANN SSDRDEIIIS PKGLSDDDAT 360 IKNTIVQNQE KEINCEKLME ITKVKNINNQ ENVDGVQLSR MPSLDMDMIW DALLVSDLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 243 | 314 | 1 | 68 | ATERF1 |
3gcc_A | 2e-21 | 243 | 314 | 1 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16494 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g091950.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY044236 | 2e-12 | Lycopersicon esculentum ethylene-responsive factor 1 (ERF1) mRNA, complete cds | |||
GenBank | EU395634 | 2e-12 | Solanum lycopersicum ethylene response factor (ERF1) gene, promoter region and complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247959.1 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | K4CWM1 | 0.0 | K4CWM1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g091950.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 | Representative plant | OGRP11282 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-52 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g091950.1.1 |
Entrez Gene | 101246474 |
Publications ? help Back to Top | |||
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