PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g091880.2.1

Common Name

LOC101263547

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 290aa MW: 32265.6 Da PI: 6.103

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g091880.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG+ekAtPkti+++m+vkgLtl+h+kSHLQkYR+ Solyc09g091880.2.1 51 KPRLRWTTELHERFVDAVTQLGGPEKATPKTIMRTMGVKGLTLYHLKSHLQKYRM 105 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.059	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-33	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	50	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-24	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-9	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	9.8E-27	149	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MYSTLPIRNL VIEENGDFFN HHMNHNLQAS LSVDGTNLPG DSCLVLSTDP KPRLRWTTEL 60 HERFVDAVTQ LGGPEKATPK TIMRTMGVKG LTLYHLKSHL QKYRMGKQSA KEATENSKDV 120 SCPAESQETG SSTSGSSRVI VQDINEGLQV TEALRVQMEV QQRLHEQLEV QRHLQLRIEA 180 QGKYLQSILE KACKAFNSQS LELNGLEMNR EELSELAFIN GPSLPDIGPS FENKNACNIP 240 AMLGDCLLDD CLPSNGISSL KKRPRGFTNV NGLPMESNTR EVEWMMSNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	51	107	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g091880.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247854.1	0.0	protein PHR1-LIKE 3-like
Swissprot	Q94A57	1e-108	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3Q7I9X6	0.0	A0A3Q7I9X6_SOLLC; Uncharacterized protein
STRING	Solyc09g091880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-103	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc09g091880.2.1
Entrez Gene	101263547

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]