PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g091250.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 305aa    MW: 33761.4 Da    PI: 8.0228
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g091250.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-19195229135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  Solyc09g091250.2.1 195 CQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRL 229
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.136189225IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-16189243IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-15191252No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14192227IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.99E-14194242No hitNo description
PfamPF003202.6E-17195229IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKMEDLDPTA CFMVDDDLLN FSLEDETVEE DDEKSTITSK DPLSYSSSSS TNPLVSLLPH  60
PECVEEELEW LSNKDAFPAI EFGILSENPG MVFDHHSPVS VLENSSSTSH SSGNGVVSGN  120
AYTSCCVNLK VPVNYPVRAR SKRRRRRRRG GFADMPSEHC LPVTQPSFKN VKQREPLLSL  180
PMNSAKSAAS IGRRCQHCGA DKTPQWRAGP LGPKTLCNAC GVRYKSGRLL PEYRPANSPT  240
FSAAAHSNSH RKVLEMRKHK IGVGGMLIHE ACGYRLLGMY LLSSFNSCRR WCSLEMEVLK  300
FTVF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139148RSKRRRRRRR
2141146KRRRRR
3142148RRRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.197120.0flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g091250.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326807.10.0GATA transcription factor 1
TrEMBLA0A3Q7I8440.0A0A3Q7I844_SOLLC; Uncharacterized protein
STRINGSolyc09g091250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-41GATA transcription factor 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]