PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g090830.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 319aa MW: 35678.7 Da PI: 8.8295

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g090830.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.3	1.7e-08	258	305	8	55
GRAS 8 cAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 v+++ + +a++lL+ ++ as +g+p+q+++ yf+ AL++r+ + Solyc09g090830.2.1 258 SPPLVATRTFDRARKLLSLCNQSASATGTPVQKIVYYFADALQHRIDK 305 455789999*************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.1500	2.1E-27	9	93	No hit	No description
SuperFamily	SSF82657	1.57E-25	9	96	IPR002634	BolA protein
Pfam	PF01722	9.7E-29	17	96	IPR002634	BolA protein
Pfam	PF03514	5.8E-6	258	305	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASRGILSRA SRMKTKLQSA LEANIIEVED VSYQHAGHAA VRETGTNETH FNLKIVSNKF 60 DGQNLVKRHR MVYDLLTDEF QSGLHALSIV AKTPKEDGCF KTAILFCKTM AIYLKESNHL 120 IMPSSQFLTS CLEGLLHIDF YGLSSRFQLS FPSQERFLRV INHPPLEIAL SLRLECAKHG 180 VRDHPEPGED YSSSCSHARN KKKANQCSDH VEGRQGSLRQ GLNESSFQLS LGTSVSLVLS 240 APTIKKIDLD LAELLQASPP LVATRTFDRA RKLLSLCNQS ASATGTPVQK IVYYFADALQ 300 HRIDKRDEEN AIYWRGRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4pui_A	1e-33	8	96	5	95	SufE-like protein, chloroplastic
4pui_B	1e-33	8	96	5	95	SufE-like protein, chloroplastic
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g090830.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7I9E0	1e-126	A0A3Q7I9E0_SOLLC; Uncharacterized protein
STRING	Solyc09g090830.2.1	0.0	(Solanum lycopersicum)

Link Out ? help Back to Top
Phytozome	Solyc09g090830.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]