PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g082670.2.1
Common NameLOC101254638
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 357aa    MW: 41757.6 Da    PI: 5.3225
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g082670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35381302103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye ++d+++++++sws  +nsf+v+d+++fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+++
  Solyc09g082670.2.1  38 FLTKTYEFVDDQNTNNVVSWSIGNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDH---------WEFAHEGFLRGQRH 119
                         9********************999******************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Solyc09g082670.2.1 120 LLKTIRRRKTS 130
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3731122IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3333127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-5734127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDPNFGVPIK EEFPRSNEPT MWIPQPMEGL HENGPPPFLT KTYEFVDDQN TNNVVSWSIG  60
NNSFIVWDPQ TFAMNLLPRY FKHSNFSSFV RQLNTYGFRK VNPDHWEFAH EGFLRGQRHL  120
LKTIRRRKTS NFHPGQGSNQ GIDSYIELGK LEIDGEIDRL RREKKDLMME LVELKQHQQT  180
TKSHIKSMEE KLKRTEAKQQ QMMNFLAKAM QNPRFLEQMM QQKERRKELE EEIRNKRRRQ  240
IDHHQGPSNI VGELDHSFNN SDGNFNIKME PHEYYYGEMN GFDNLELETS LGMSMQGGPS  300
ENTINFEDKS IDHEGFWEGL LNESIEDEIN LLEGENEEDH VDVLAHQLGF LGSTPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-253613018123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224238RRKELEEEIRNKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g082670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247676.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A3Q7I8A80.0A0A3Q7I8A8_SOLLC; Uncharacterized protein
STRINGSolyc09g082670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]