PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g074780.2.1 | ||||||||
Common Name | LOC101259784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 521aa MW: 57535.1 Da PI: 9.1016 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Solyc09g074780.2.1 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.7e-05 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Solyc09g074780.2.1 152 WKCDKCSKKYAVQSDWKAHQKTC 174 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-8 | 75 | 98 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.3E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 70 | 117 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.05E-8 | 147 | 173 | No hit | No description |
SMART | SM00355 | 94 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MSNISGEEGS FSSGEEAHLH TSNNNISSIT TSNGSTSQSQ QQQPLAKKKR NLPGNPDPNA 60 EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTA EVKKRVYICP 120 EPTCVHHNPS RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK 180 CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNME HNMHSGQMHE IMSSNASLGL 240 SEFNNFDPKN SLKALPQELL PIPFKSMTNN MAPGGMFSIT SGNLFGNSPR SVASSSSGLQ 300 LSSNIPSNFN YLQDNGKNRV AQGQGQLSSV PMSATALLQK AAQMGATASS SINSPMMQKS 360 FVTSAMAGPD ISITRPSPNY DNFQMQQDSN NHQSQSQNQN LAAVINDMGI YSGILMSNDQ 420 NNDGGYIKNV TEVLDRDNHN HSTNDRVRNQ TMMVQNGSND MLTVDFLGIG GASRAPISNL 480 QEQRRFEAAI NQQRLQASSS FHHQQNINHN SGLEKPIWDV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-35 | 148 | 218 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 6e-35 | 148 | 218 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g074780.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247541.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-112 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3Q7I6R1 | 0.0 | A0A3Q7I6R1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g074780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-101 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g074780.2.1 |
Entrez Gene | 101259784 |
Publications ? help Back to Top | |||
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