PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g074690.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 309aa MW: 34625.9 Da PI: 7.461

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g074690.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.6	1.5e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +R++ +k Solyc09g074690.2.1 65 KRPRDLLNPKAIKYMQSIFSIKDAINKKETREISALFGVTVTQVRDFFAAQRTRVRK 121 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	62	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-7	64	124	IPR009057	Homeodomain-like
SMART	SM00389	0.0046	64	126	IPR001356	Homeobox domain
CDD	cd00086	1.34E-4	65	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-5	65	123	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MENQLQLALT SPTTPFSSLF ESQKEILNSQ IYQLQNIVVQ QCNLTGVNPL SQEMAAGALS 60 IKIGKRPRDL LNPKAIKYMQ SIFSIKDAIN KKETREISAL FGVTVTQVRD FFAAQRTRVR 120 KFLRLSREKP ITTNLSIEGP IPLSSDPSSQ TEPVPLDSAV PISTEEGPSC STQDEVLTAM 180 DERDRHFVDN ILTLMCKEET FSGRVKLMDW ILEVQNPSVL YWFLTKGGVM ILSAWLSEAA 240 GEEQTSVLHL ILKVLCHLPL HKAFPGHMSA ILQSVNSLRF YRTPDQISQT GQEFCLQDGA 300 RYLQRARL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g074690.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247447.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-111	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A3Q7I761	0.0	A0A3Q7I761_SOLLC; Uncharacterized protein
STRING	Solyc09g074690.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-113	HB-other family protein

Link Out ? help Back to Top
Phytozome	Solyc09g074690.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]