PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g074640.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 436aa    MW: 46925.6 Da    PI: 8.7118
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g074640.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.7e-114974126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++ + C++++r+G C yG++C+F+H+
  Solyc09g074640.2.1 49 PGVPDCSYYLRNGSCGYGPNCRFNHP 74
                        5789*********************8 PP
2zf-CCCH40.93.5e-1397122227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C++f+rtGtCk+G +CkF+H++
  Solyc09g074640.2.1  97 GEPICQYFLRTGTCKFGVSCKFHHPR 122
                         579*********************96 PP
3zf-CCCH34.33.9e-11146168527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C ++++tG+Ck+G +CkF+H++
  Solyc09g074640.2.1 146 ECTYYLKTGHCKFGITCKFHHPQ 168
                         7********************97 PP
4zf-CCCH37.83.3e-12299324227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++ +tG Ck+G++CkF+H+p
  Solyc09g074640.2.1 299 GQSICQYYVKTGDCKFGSSCKFHHPP 324
                         7899********************97 PP
5zf-CCCH32.81.2e-10345370227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +  +C+f++  G+Ck+G+ CkF H++
  Solyc09g074640.2.1 345 GVQPCSFYLLKGFCKFGSACKFDHPM 370
                         6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.844876IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-64875IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-95074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55474IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.63895123IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-1197122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-697123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-6100122IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6144169IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854297325IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-6301323IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394343371IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8345370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5345372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4347368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MELYGPSSGS NGSQSDHQSE WVSVEQETGL DGSMQKLGLF GREVYPERPG VPDCSYYLRN  60
GSCGYGPNCR FNHPSDRDRR SGGKMQLGGV EFPERMGEPI CQYFLRTGTC KFGVSCKFHH  120
PRNFGGSLSN IPLNTYGYPL RMGEIECTYY LKTGHCKFGI TCKFHHPQPA GMSVPAPARP  180
FYPTVQSLPA PPEECNSALT GLRVARPPIL PGSYVPSAYG PVLLHPGVVT IQNWSPYSGP  240
VSPALSPGVH PSAGLTSVYG MSQLASSPHA FAGPYSPLPP AASPSSKTQK GKSFPERPGQ  300
SICQYYVKTG DCKFGSSCKF HHPPDWIASK TNCAISPIGL PLRPGVQPCS FYLLKGFCKF  360
GSACKFDHPM GTVQYSSSAS SLPDLQVAPY MLRSSFTLAP MLLPELQAGF VTGSKVDVSL  420
SRAPSSMKVQ LVQLT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.191770.0callus| floral bud| flower| fruit| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g074640.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247451.40.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-162C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3Q7J1850.0A0A3Q7J185_SOLLC; Uncharacterized protein
STRINGSolyc09g074640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-162C3H family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]