PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g072830.2.1

Common Name

LOC101245990

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 451aa MW: 49380.1 Da PI: 4.7221

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g072830.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.9e-34	250	304	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l++mkv+gLt++hvkSHLQkYR+ Solyc09g072830.2.1 250 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKMMKVEGLTIYHVKSHLQKYRT 304 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.736	247	307	IPR017930	Myb domain
SuperFamily	SSF46689	5.2E-18	248	304	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-31	249	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-25	250	304	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	252	303	IPR001005	SANT/Myb domain
Pfam	PF14379	7.5E-26	336	383	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0055063	Biological Process	sulfate ion homeostasis
GO:0071486	Biological Process	cellular response to high light intensity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEARPAVSVQ SVVASQLSNC GASGALSSSL SIFPTALGEK YPKFPDLQQA SMGKELKQHP 60 ATVVSSLPSN SGAVGLMFSS SSGFSADLQF SSVSPQEKHS GTAPFISQST YSETSIQLPH 120 SGVLQSTASS QYLNENHEPW CIDPLPNFLD YSMDNPVQNS QVASSNKQSD WQEWADLVLN 180 DEDALPSDWN DIIADTSIGD SELKMQFQEE KQPLNFPMQQ VQASQQIPPV PVETSAIAPV 240 SSPASSAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKMMKVEGL TIYHVKSHLQ 300 KYRTARYKPE ASEAGSSEKK QSSLDDLASL DLKTGIEITE ALRLQMEVQK RLHEQLEIQR 360 NLQLRIEEQG RYLQMMFEKQ CKSMPGADLA KGSSSSTADD AFAQLSQVDT AKEVDHEKQK 420 EREIEVLGDP ETNITSTSDS PPLKRSKLDE *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEARPAVSVQ SVVASQLSNC GASGALSSSL SIFPTALGEK YPKFPDLQQA SMGKELKQHP  60
ATVVSSLPSN SGAVGLMFSS SSGFSADLQF SSVSPQEKHS GTAPFISQST YSETSIQLPH  120
SGVLQSTASS QYLNENHEPW CIDPLPNFLD YSMDNPVQNS QVASSNKQSD WQEWADLVLN  180
DEDALPSDWN DIIADTSIGD SELKMQFQEE KQPLNFPMQQ VQASQQIPPV PVETSAIAPV  240
SSPASSAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKMMKVEGL TIYHVKSHLQ  300
KYRTARYKPE ASEAGSSEKK QSSLDDLASL DLKTGIEITE ALRLQMEVQK RLHEQLEIQR  360
NLQLRIEEQG RYLQMMFEKQ CKSMPGADLA KGSSSSTADD AFAQLSQVDT AKEVDHEKQK  420
EREIEVLGDP ETNITSTSDS PPLKRSKLDE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-32	250	308	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8760	0.0	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g072830.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828678	2e-09	Solanum lycopersicum mRNA for heat shock protein 70 isoform 1 (hsc70.1 gene)

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004247499.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1
TrEMBL	A0A3Q7I530	0.0	A0A3Q7I530_SOLLC; Uncharacterized protein
STRING	Solyc09g072830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2753	23	49
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	4e-92	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Solyc09g072830.2.1
Entrez Gene	101245990

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]