PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g065670.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 471aa    MW: 51502.5 Da    PI: 8.9169
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g065670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Solyc09g065670.2.1 44 FVCEICNKGFQRDQNLQLHRRGH 66
                        89*******************88 PP
2zf-C2H211.60.00083120142123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Solyc09g065670.2.1 120 WKCDKCSKIYAVQSDWKAHSKTC 142
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-54366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-64366No hitNo description
SMARTSM003550.0174466IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9494466IPR007087Zinc finger, C2H2
PfamPF121717.4E-54466IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4108141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-6115140No hitNo description
SMARTSM00355180120140IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MVSNHNHHEQ PPKIKKKRNL PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ  60
LHRRGHNLPW KLKQRTNKEN KKKAYVCPEP TCVHHHPSRA LGDLTGIKKH FCRKHGEKKW  120
KCDKCSKIYA VQSDWKAHSK TCGTKEYRCD CGTLFARKDS FVTHRAFCDA LAEESARLSA  180
NSGLMHRAAA TSTIANSAAI ADEPNFHLDQ SSVFPFPANQ RHFANPPPPQ LPISAAATGV  240
TTHISLNPWE PQIPLNPNHT HEENHHQITH PVPIKTESIH FPISSSLPFY HDQHYPVFHR  300
GSFSIPSPQL AATALLQRAT TMGTNSTVNH VNSTMAHLNR GTLTHVTPNG FLSFGSENIP  360
GNWQKRDNLT RDFLGLTGDH HHHHDHDDSS SSAGGVGGGG GGGQVLPTNG NVGNGLLLSY  420
GGNRMQDFQQ TLYERDNSVL KHHPLGFGFA GAGAGAGAAA DSTTGTWGDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34116182369Zinc finger protein JACKDAW
5b3h_F2e-34116182369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.240530.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g065670.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247200.10.0protein indeterminate-domain 9
TrEMBLA0A3Q7I4C60.0A0A3Q7I4C6_SOLLC; Uncharacterized protein
STRINGSolyc09g065670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]