PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g065660.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 373aa    MW: 42442.4 Da    PI: 5.0543
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g065660.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36431342102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sw++ g+sfvv+d+++f++++Lpk+Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F kg+k+
  Solyc09g065660.2.1  43 FLTKTYEMVDDSSTDHIVSWNRGGQSFVVWDPHSFSTTLLPKFFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEAFLKGSKH 124
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+k+
  Solyc09g065660.2.1 125 LLRNIKRRKT 134
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-3639132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3939132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6039132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3243132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNQLYSVKEE FPGSSSGGGG GGEPPPATPQ PMEGLHDIGP PPFLTKTYEM VDDSSTDHIV  60
SWNRGGQSFV VWDPHSFSTT LLPKFFKHNN FSSFVRQLNT YGFRKIDPER WEFANEAFLK  120
GSKHLLRNIK RRKTPNSSQP LPSTEQGLGP CVELGRFGFD GEVDRLRRDK QVLMTELVKL  180
RQNQQNTRAY LRSLEVRLQG TERKQQQMMN FLARAMQNPE FVQQLIQQKG KRREIEEDIT  240
KKRRRPIDPQ GPSATLHVGG SSHSIKSEPL EFGEANEFQV SELEALALEM QGYGRARKDQ  300
QEEYTIEGLE QFGNTDKELD VGFWEELFND EDVSGNEDGE EEDVDVLAES EFSSIQRRMK  360
KAAIWIDQLL VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-244113427131Heat shock factor protein 1
5d5v_B1e-244113427131Heat shock factor protein 1
5d5v_D1e-244113427131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244KRREIEEDITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g065660.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1203602e-09Solanum lycopersicum heat stress transcription factor A3 (HSFA3) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326419.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_010326420.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_019070996.10.0heat stress transcription factor A-7a isoform X9
RefseqXP_025888693.10.0heat stress transcription factor A-7a isoform X9
SwissprotQ9LUH81e-120HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A3Q7I4040.0A0A3Q7I404_SOLLC; Uncharacterized protein
STRINGSolyc09g065660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]