PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g065100.1.1
Common NameAH
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 681aa    MW: 75007.4 Da    PI: 4.8287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g065100.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.7e-14485531455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Solyc09g065100.1.1 485 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-4911188IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.644481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11485530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-16485535No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18485542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-18485541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MEIIQPNSLQ LQNMLQNSVQ SVKWTYSIFW QFCPKQGVLV WRDGYYNGAI KTRKTVQPME  60
VTAEEASLHR SQQLRELYDS LSAGDSNPPA RRPSAALSPE DLTESEWFYL MCVSFSFPPP  120
IGLPGKAYSK KHHIWIMGAN DVDSKVFCRA ILAKTVVCIP LLDGVVELGT IEKVQEDIGF  180
IHRVKSFFNE PQQAQPPKPA LSEHSTSDPA AFSEPHFYFS NTPSSAGICP ADQDGRITGE  240
EENEDEDEDE AEDDEDENDE AELDSDGIAI QSGAGAANPM AAEASELMQL DMSEAIRLGS  300
PDDGSNNMDT DLYLDGISQA GNTADSFKAE TAISWANFQD LQHLPGIPSY DELSQEDTHY  360
SQTVSAVLEH LSNTSSKFAS SATIMGSISP DSAQSAFTLW PVTCSPNLSH CRRHDIGDGS  420
GTTSQWLLKS ILFTVPFLHS TKKLSEALSP KSRDAAAADS SAAASRFRKG CTINSCTQQE  480
ETSGNHVLAE RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKVQDLEAR  540
DRHTEITKKS DEKSGSPIVK AFPVKGKRRM KSTVEGSIVG APAKMTGSPP MEEEVLQVEV  600
SIIENDALVE LRCPYKEGLL LDVMQVLREL KVEVVAIQSS LSTGLLLAEL RAKVKENIYG  660
RKASILEVKK SINQIIPRVN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-2051893193Transcription factor MYC3
4rqw_B4e-2051893193Transcription factor MYC3
4rs9_A4e-2051893193Transcription factor MYC3
4yz6_A4e-2051893193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494ERRRRE
2490495RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g065100.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326368.20.0basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A3Q7I3M40.0A0A3Q7I3M4_SOLLC; Uncharacterized protein
STRINGSolyc09g065100.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.17e-89bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  3. Qiu Z, et al.
    The Tomato Hoffman's Anthocyaninless Gene Encodes a bHLH Transcription Factor Involved in Anthocyanin Biosynthesis That Is Developmentally Regulated and Induced by Low Temperatures.
    PLoS ONE, 2016. 11(3): p. e0151067
    [PMID:26943362]